FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003662691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4129
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG90.21797045289416325No Hit
GTCTTGATCTCTTGATCTCATGATCCATCTGCCTTGGCCTTCCAAAGTGC70.16953257447323808No Hit
ACCACCATCAGCTACCTCCCACACGCGCCGCCCTTCGCCGGTGGCCACCC60.1453136352627755No Hit
TTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTA60.1453136352627755No Hit
CCTTATACCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTT60.1453136352627755No Hit
GGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT60.1453136352627755No Hit
GCGCACGGCCTGTCCGCTGCACACCAGCTTGTTGGCGTCTTCGTCGCCGC60.1453136352627755No Hit
CAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAAAGAGGACCTGCG50.1210946960523129No Hit
GGGTTAACCCTCGGAATGGCGCATCCGGCCCCGAAAAGGGGCCAGTAATT50.1210946960523129No Hit
GTACATGGGGCCCCACATACCAAGCGTGACGGCCTTGGCTCTCCCTAAGT50.1210946960523129No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA50.1210946960523129No Hit
GGGTGGCAAGGCCGGTGCCGTTGCAGAGGTCGTACTGGCAGCAGGAGGTG50.1210946960523129No Hit
CCGGGCACACCGCGCCGCCACCCCGACCCCGCTGCGCACGGCCTGTCCGC50.1210946960523129No Hit
GCTGTACACTGGCTGTCCACAAGGCCGCACCTCACAAATCCGGGTTTCTT50.1210946960523129No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG50.1210946960523129No Hit
ACATTGCACTGTTCATTGGGTGGCTCTGGCCTGGGGCCTGGCGGTCGAGG50.1210946960523129No Hit
GCCAATGCCCGAGGGGAAGGAGTCTTCAATGGCGGCTCAATCTAGCTCTT50.1210946960523129No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA50.1210946960523129No Hit
GCCTAGATGTGATACACGTTTCTGGAAACTGCCTCGTCATGCGACTGTTC50.1210946960523129No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGG50.1210946960523129No Hit
ACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTC50.1210946960523129No Hit
GGTTTATAGGGGGAGGAGGAGGCAGGTGGTCTAAGTGCTGACTGGCTACG50.1210946960523129No Hit
GCCGAGGGTTGGGACAGCCCAAGTTGGGGAGAGATAGTTCTTGGGGACAC50.1210946960523129No Hit
GCTCACGCCTGTAATCCCAGCACTGAGAGGCCGATCACTTGAGGTCAGGA50.1210946960523129No Hit
CGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTCCTTCCTGGGCATGGA50.1210946960523129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)