FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003662694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4133
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG80.19356399709654004No Hit
CCTTAGTCGTCACCCTTCTCCACTTGACCAGGCTGGCGCTCTCCACCTGC80.19356399709654004No Hit
GCTCTTTCTCTGGCCTTTCTTTGCCTTCTTCTAGGTGTCGTTTTCTCTTC70.16936849745947255No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG70.16936849745947255No Hit
ACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACG60.14517299782240503No Hit
GGCTACTCCTGCGCGCCACAATGAGCTCCCGCATCGCCAGGGCGCTCGCC60.14517299782240503No Hit
CAGCGGAACCGCATCTTCACAGTCCTGGTCAGCTGGGGCGTGCAGCATCG60.14517299782240503No Hit
GATGTTTACAGTTGGGCTGGAAACTTTCCCCGTTTTGGTAGATTCTGGAG60.14517299782240503No Hit
GATCTAGCCCTATGGGTATATATACGCATTTATGGCTATATAGAAAAACT60.14517299782240503No Hit
GCCTGAAAAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCA50.12097749818533754No Hit
GCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCC50.12097749818533754No Hit
CCCGTAGCCAGTCATGCCTGCCTGGGACGCCCCGCGGTTGGTGCCCATCT50.12097749818533754No Hit
GAAGACACCTGCAAATAATCCTGCCAGCCCCTGTGACCGCCAGACCCCAT50.12097749818533754No Hit
GTCACTAATAGAATGTCTCCAAAGCTGGATTGATGTGGAGAAAACACCTT50.12097749818533754No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT50.12097749818533754No Hit
GCTGACAGCTATGAAGAAGACCTCCTGTTTGCCACGCTGGACCCGATGAC50.12097749818533754No Hit
GTCTTAGACCTTGACAAAAACCAGGTGGGCAGAGTGCACCAGGTCAGCCA50.12097749818533754No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCG50.12097749818533754No Hit
ACCTGTGCCCCTCCCCCAGGACGAGATAAGGGCACACCCTTTAAGTAAGG50.12097749818533754No Hit
GTCTGTGGCTTCCCTTGATCTGACTGGGGGCCTGCCAGAGGTTGCCACCC50.12097749818533754No Hit
GCCTTGCTGTGTCACCCAGGCTGGAGTGCGGTGGCATGATCTCGGCTCAC50.12097749818533754No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG50.12097749818533754No Hit
TTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC50.12097749818533754No Hit
CGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCC50.12097749818533754No Hit
ACTGCACACTGTATCAATTAAGCAACACGAAGCCTTCAACATCAGCCTTC50.12097749818533754No Hit
GGGTGGGGCTCCTCAGTAGGTGATTGTCCACTCCTTGACAGAGGCATCAT50.12097749818533754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)