FastQCFastQC Report
Tue 10 May 2022
EGAF00003664006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19541
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.1893454787370145No Hit
GTACATGGGAACAGCAATTGAAGTGAAGATGATTGACCGCACGCAATTGA320.16375825188066118No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT320.16375825188066118No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC300.15352336113811985No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG290.14840591576684917No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA280.14328847039557854No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG270.13817102502430786No Hit
GATAAGAACCGTCTGCGCCGCCAGCGCTGCAATGCCGGCCGCGTGAGCGG240.12281868891049587No Hit
ACCTAGGAGGACTCAAATGTCCTTAACATTTTTGTCAAATTTCTCAAACA230.11770124353922523No Hit
CTCCTCGAACACGCCAAAGTAGCCAGCGAACCCTGTTGCGGATAAGAACC230.11770124353922523No Hit
CGCTAACACCACACGCAAGCTGGTCGGCATCGCTCATCAAGCGGACGGAG230.11770124353922523No Hit
ATCAAGCACGGTCCGCTGAAGAACCTGGACATGCCCGGCATGACCATGGT220.11258379816795455No Hit
GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG220.11258379816795455No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC210.10746635279668389No Hit
GTCTCTGAATGCACGGTCGAGCCACCACATCACCGGATAGTCGTAGGCGA210.10746635279668389No Hit
ATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAACTTCA210.10746635279668389No Hit
GTGCTGACCAACGCCCTCATCCTCGACCACTGGGGCATCGTGAAGGCCGA200.10234890742541324No Hit
GCCCTACACCGTGAACACGCTCGACGAGCACGTCGACATGCTCATGGTGT200.10234890742541324No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA200.10234890742541324No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT200.10234890742541324No Hit
TTTCCAGATAGTGCAGAGCTCCGGCAGATATCCAGATGTCATTGCCATCC200.10234890742541324No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG200.10234890742541324No Hit
GTACATAGAGGCATGGAAAACTGTGGTCACTAATAAAATTAATCTGCCTC200.10234890742541324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)