FastQCFastQC Report
Tue 10 May 2022
EGAF00003664065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1421752
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG24310.17098621981892764No Hit
GAGTAGCACCAGCGGCTGCGGCGGCGGAGCTCCTCCGAGGTCCGGGTCAC19120.13448196309904964No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCCGTGAGCTCCCGCTGGT18750.13187954017296968No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT18450.1297694675302022No Hit
GTACATGGGAGTAGCACCAGCGGCTGCGGCGGCGGAGCTCCTCCGAGGTC16380.11520996629510631No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCAGTGAGCTCCCGCTGGT15590.10965344166915186No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC14900.10480027459078657No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG14590.10261986619326015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)