FastQCFastQC Report
Tue 10 May 2022
EGAF00003664066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1421752
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG30190.21234364361717092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25130.17675375170915883No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT20680.1454543408414407No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC18190.12794073790647031No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCCGTGAGCTCCCGCTGGT16900.11886742554257002No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15990.11246687185950854No Hit
GTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGTAGAACTGATG15330.10782471204542003No Hit
GAGTAGCACCAGCGGCTGCGGCGGCGGAGCTCCTCCGAGGTCCGGGTCAC15310.10768404053590219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)