FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003664152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCCCGATCACCAGTATATCTACTTTATGCATCATCCTGGATTAAATA512.195121951219512No Hit
GCCCTGCGCCTTCGCGACGCGGATGAAGCGGTTGCCGGCCGAGGTGCCGG37.317073170731707No Hit
TTGCAGCGGAACATGGTTGCAAATGCAAGAGACAGGACTTGCACTCATGA24.878048780487805No Hit
CTGCCGAAGAAGGCTTCGCTCCCGCGCGCCCGCCTGCGGGCCGGTTCATC24.878048780487805No Hit
CCGGAGGTCATGGGCCTCGTGGCACTGATGCTTTTGCAGCATGCACGCAG12.4390243902439024No Hit
GCCAAGCCCTAGACCTGCCGGCGCGTCCCGGTCGGATCGGTCTGCCGGCG12.4390243902439024No Hit
ATCCTGGTCGATAGCCTGTACACGCAGCCCGCCAGCCTCACCATCGCCGC12.4390243902439024No Hit
CGACGACCATTTCCAGTTCGGTGCAGCCGAGCACGATTGCTTCGGCGCCG12.4390243902439024No Hit
CTACTTCGAGGATCTCGCGATCGGCGATCGGTTCGACGGCGCGCCGACGA12.4390243902439024No Hit
GTGCAGGGTCTCTTTAGTCAGATCTTCCACGTCCGAGTCTTCCATCCAGT12.4390243902439024No Hit
GGCCGACACCGCCTTGACCCCGACCTCGATGGCGCCCTCGACCACGTCGA12.4390243902439024No Hit
GCGTACTCGGTCGCAACGCGGCGCTGCTGCCCGCGCTGCAAAGCGCAACG12.4390243902439024No Hit
CCTCGGTCATGGTACGGCTGGTGGGTTCCGGTACGGATATCTCGCTATGG12.4390243902439024No Hit
GCCTGATCGACCGTGCCGACGAGCGCATCGCCCTGTTGGGGCGCGAACTG12.4390243902439024No Hit
ATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGG12.4390243902439024No Hit
CAGTATCCCAGCAGGAGCAGCGGACTTACCGCCATATGTACCTTCTCTGT12.4390243902439024No Hit
ATAACGAGGTGGTGGTGCCGGTGAACGCCACCGTTCGTGTCCTCGTAACG12.4390243902439024No Hit
GATTTTACTATGGGAGTCGGAAGGACGCCGAAATATTATTGCAAAAGGTC12.4390243902439024No Hit
GCGAGGGCGCGTATTCCACAGCTTCGCCTGATCTATGCGTCCGCCGTGGC12.4390243902439024No Hit
NACACCATCAAGGGCTGGCTGCTCGAGTCGTTCGCCGGGCGCAACGCCAC12.4390243902439024No Hit
CTTGGACACCGTGTAGACGGGGTGCGCGCCCAGCCAGTGCGGGTTGCTGT12.4390243902439024No Hit
TAGTTTAACTTTAGGGGTCTACTGTTCATCTTGGACCTTTTATGGCGCAA12.4390243902439024No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12.4390243902439024No Hit
GAACAACCCGATGACCGTCTGCGGCGCCAGCCCCATCGCGACGGCGGCGG12.4390243902439024No Hit
AAACCACACTCGTAAATTTGGAGTGAAATTCTGTCCTGTAAGTTCAAGCA12.4390243902439024No Hit
GGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCC12.4390243902439024No Hit
GCGCATTGGCGAGGCAGAAGAAGGCGATCGGCATCACCACCGCGCCGTCG12.4390243902439024No Hit
GGCTCGACATCAGCGAAAGCACGGTCAAGGTCCACATCCGCGCGATCATG12.4390243902439024No Hit
TCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGA12.4390243902439024No Hit
GACCTCGGCTTCGGTTGCCCCGAACTTGGATCGTTCAGCCTGTCGGAGAT12.4390243902439024No Hit
CACACCATCAAGGGCTGGCTGCTCGAGTCGTTCGCCGGGCGCAACGCCAC12.4390243902439024No Hit
CCATCCGCTGGTCCGAGTCCATCCCGAAACCGGCGAGCGCGCGCTCTACG12.4390243902439024No Hit
TCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGT12.4390243902439024No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)