FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003664221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGCGGACCGCCCGCCCGCTCCCAAGATCCAACTACGAGCTTTTTAAC44.301075268817205No Hit
GTACCGAAGACAGAGGCTGTGGGGACAGCCTAGGGGCCTGGATCTATTGC33.225806451612903No Hit
CTCCTACTCTGTATAACTTTACTCGTGTAGATGATGATGAAGCTACCAGC33.225806451612903No Hit
CACCCCCGACGCGCTCCGCGCGGAACGGGAGGCGAAGCTCGCCACCAAGC33.225806451612903No Hit
CGGAGGAGGCGATCCAGGCGACGCTGGGCGAGATTGCGCGCAACCGCACC33.225806451612903No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA33.225806451612903Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CATAAATATTAAGATTTACAATGTCTATTAGCAAGTCACCCTAACTCATC22.1505376344086025No Hit
ACTGTGCGCAATCGCTACATCTCACGACGACGTTTTCTCAAAGCTGGCAC22.1505376344086025No Hit
AGTTTGAAGTCCTTGAGAGAGGATTATGATGCGACTGTGAGTGCGTTCGT22.1505376344086025No Hit
TCCTAATTGGGGGTTTCTCTTTCTGTCCGGTGTCCGGACTTTCCTAATTG22.1505376344086025No Hit
CAATCATGCTCAGGTCGTGTCCCAGATTTAAGGGAAGCCAAGGAGCTAGC22.1505376344086025No Hit
GCTCACTGCAACCTCCGCCTCCTGCATTCAAGTGATTCTCCCGCCTCAGC22.1505376344086025No Hit
CCACTGACCTCTAGATGAAGGCCCCTGGCCCTGGTTCCTGTTAATTAACC22.1505376344086025No Hit
GCCCGGGGGTCATGGCCAGAACGCAGAGACTTTATGATGAGGACGGTGCC22.1505376344086025No Hit
AATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGC22.1505376344086025No Hit
ATGCCAGCACCTTGGGAGGCCGAGGCTGGTGGATCACCTGAGGTCAGGAG22.1505376344086025No Hit
CTCTCGATTCGGATCTCGCGGGACAACCACCACACGACCGGGTGGTAGAA22.1505376344086025No Hit
TAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGAT22.1505376344086025No Hit
CAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGGCTG11.0752688172043012No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.0752688172043012Clontech SMART CDS Primer II A (96% over 26bp)
GCGTTGATACCACAGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.0752688172043012Clontech SMART CDS Primer II A (96% over 26bp)
ATGTTGAGCAGGCCGAAGATCACCGCCAGCCCGAGCGACAGCATGGCGTA11.0752688172043012No Hit
CTTCAGTACAGGTGTTGTCGGTTTCCCACAATTCAAAGCCGAAATTGCTA11.0752688172043012No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT11.0752688172043012No Hit
CTATTGTTGCTAATCAGCCGCAGGTGCTAGCTGGGGCTATTGATAAAGCG11.0752688172043012No Hit
ATAGATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAG11.0752688172043012No Hit
GCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGC11.0752688172043012No Hit
TTTTTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG11.0752688172043012Clontech SMART CDS Primer II A (95% over 23bp)
CTCATAGGCCTTGTAGGTCTCCAGGTACCGCCCAGCTTCCTCGGGGCTCC11.0752688172043012No Hit
TTCCACGACCAGCCCCGCCGCGTTGGCGGCGCTCAACGCTGTCACCGCCG11.0752688172043012No Hit
CTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGG11.0752688172043012No Hit
ACCCCGAAGAGGTCTACTGCTGCACCGCCGGCAACAGCATCGACCGCGAG11.0752688172043012No Hit
GCCAATAAATTGGAAAACCTAGAAGAAATGAATAAATTCCTAGAAACACA11.0752688172043012No Hit
CCACAATGGTTATCGCTTACATAAAGCAGGTGAACTATCTCAACCACAAA11.0752688172043012No Hit
CGGGGGATTCCTGAATTCCATGTATTTCAGGCGTTGGAATTTTGTCGGGA11.0752688172043012No Hit
CTTCGGGGACTGGATTGACAGTATCCTGGCCTTCTCAAGGTCCCTGCACA11.0752688172043012No Hit
ACGCAGAGTACATGGGAGGAAATAATTCTGTAGTGATAGGTTTTAATGTG11.0752688172043012No Hit
ATGCAGCAGCTTGCTGCCACCTCCGAACTGGATTTTCACAGTGACACCTA11.0752688172043012No Hit
CCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAG11.0752688172043012No Hit
CCCCACCAGTGGTCAATGTCACGTGGCTTCGAAATGGAAAAACCTGTCAC11.0752688172043012No Hit
CGCGTCCTCGGGCGCATGGAAGGCGATGCCGCCCAGCAGGATGGTCGCGA11.0752688172043012No Hit
GTTTTATAGCCGATGACAGGGTGATCAGGCCAAAATGACAGCCAGCCGTC11.0752688172043012No Hit
GCACAAACCTAATCAACTCTCGGGCTGCCAGCAACAGCGAATTGCCATCG11.0752688172043012No Hit
GTTTCCCTCCATGGTGTCCGGGGCGTGGAACGCTCGGGCAACGCGGAAGC11.0752688172043012No Hit
AGATTATATTGCGTAGTTTCTGAGTTTCCCTTGCTTTGCAACCGCAAATC11.0752688172043012No Hit
CTTCCATTTACATGTATTTGGCAAGATTTTAGAGTATTTTCTTTTAATGG11.0752688172043012No Hit
GTGTTGGTTTGGCTGGTCTCGAACTCCTGACCTCAAATTATCCCGCCCTC11.0752688172043012No Hit
ACTCAGCAGAACTCCCATTGGATGCTTTAGCGAAGCAGGAAAGAGTTATC11.0752688172043012No Hit
GCCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG11.0752688172043012No Hit
GAATGAGGAGGGCCGCGACGACGCGGACGACGGTGGGGTCGAGATTGAGG11.0752688172043012No Hit
CTCTTGATTGCAATCGGTGCCCCATTTGTAGGTGTCTTGATTGACCAACT11.0752688172043012No Hit
ACGTAGAGAAGGATGAGTTCAGCCCTACGCTTGCCTTGTCGCCAAGCTGC11.0752688172043012No Hit
GCGAATTGCCGTCGCGGTCGGCGTACTCGACCTCGAAGAGCTCGAGCCCT11.0752688172043012No Hit
TCCCCGGGCTTCAAGGGTGACGATCTCGCGAAGGGCCCCAGCTAAGCTTT11.0752688172043012No Hit
AGATTGGAATGGGCAAATTGATTTAGTATTTGGCGGACCACCTTGTCAAG11.0752688172043012No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
GCTCGAGATGATCGCGAGCGAGAACTTCGTGCCGCGAGCGGTGCTGCAGG11.0752688172043012No Hit
CTTAAAACCTTAGGATTCTGGAAATTAAATGTGGCAGTACAATTGCTGCC11.0752688172043012No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA11.0752688172043012Clontech Universal Primer Mix Long (96% over 26bp)
CGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCAGGCTCCACTCCT11.0752688172043012No Hit
GGAGAACTTGCGATTGAACCACCTTTAAAGTAGGCGTTAATACCTACTTT11.0752688172043012No Hit
GGTAATGAAGTCTGGTAGCCAAGCACCTTATGTGCTAGATAGGGGAGATA11.0752688172043012No Hit
CTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATGACGAGGTCAA11.0752688172043012No Hit
AAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGT11.0752688172043012No Hit
ACTTTGGTGAATCTGACAATTATGTGTCTTGGAGTTGCTCTTCTCGAGGA11.0752688172043012No Hit
GACTTAAGATTTGGCCTTGGCTGGGTGCGGTGGCTCACGCTTGTAATCCC11.0752688172043012No Hit
TCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTA11.0752688172043012No Hit

[OK]Adapter Content

Adapter graph