FastQCFastQC Report
Tue 10 May 2022
EGAF00003664583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2493034
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGCGATTTGAAATCTCGTATG63720.2555921820560811No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56240.22558858001936596No Hit
ATACACATCTCCGAGCCCACGAGACGGGCGATTTGAAATCTCGTATGCCG52220.20946364951300303No Hit
ACACATCTCCGAGCCCACGAGACGGGCGATTTGAAATCTCGTATGCCGTC31050.1245470378663107No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30850.12374480251773542No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25940.10404992471021253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)