FastQCFastQC Report
Wed 11 May 2022
EGAF00003664587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3271900
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAACACGAATCCATCTCGTATG80420.24578990800452338No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53660.164002567315627No Hit
ATACACATCTCCGAGCCCACGAGACCAACACGAATCCATCTCGTATGCCG53030.16207708059537274No Hit
CTTATACACATCTCCGAGCCCACGAGACCAACACGAATCCATCGCGTATG47290.144533757144167No Hit
ACACATCTCCGAGCCCACGAGACCAACACGAATCCATCTCGTATGCCGTC34200.10452642195666127No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32770.10015587273449678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)