FastQCFastQC Report
Tue 10 May 2022
EGAF00003664623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences595204
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTGTTGGGACCGATCTCGTATG9760.16397739262504957No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9260.1555769114454876No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6490.10903824571071431No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA6280.10551004361529828No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGTTGGGACCGATCGCGTATG5970.10030174528396986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)