FastQCFastQC Report
Tue 10 May 2022
EGAF00003664642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences670041
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50110.7478646829074639No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28110.41952656628474977No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14020.20924092704774785No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13910.20759923646463427No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA12260.1829738777179307No Hit
GTACATGGGATCGACCTGAGATCAGGCAAGGACACCCGCTGAACTTAAGC8700.12984280066443693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)