FastQCFastQC Report
Tue 10 May 2022
EGAF00003664655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378617
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCAGGTAAAGCCATCTCGTATG10760.2841922047874237No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8200.21657770253316674No Hit
ATACACATCTCCGAGCCCACGAGACCCAGGTAAAGCCATCTCGTATGCCG7750.20469234080878565No Hit
CTTATACACATCTCCGAGCCCACGAGACCCAGGTAAAGCCATCGCGTATG6610.17458275777368687No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5140.13575724280737528No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA4730.12492835768071692No Hit
ATACACATCTCCGAGCCCACGAGACCCAGGTAAAGCCATCGCGTATGCCG4700.12413600023242485No Hit
ACACATCTCCGAGCCCACGAGACCCAGGTAAAGCCATCTCGTATGCCGTC4200.11093004276089029No Hit
GTACATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG3810.10062939593309334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)