FastQCFastQC Report
Tue 10 May 2022
EGAF00003664659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences588712
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCCTACTGAGCATCTCGTATG13560.23033333786299584No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11070.18803761431735722No Hit
ATACACATCTCCGAGCCCACGAGACTTCCTACTGAGCATCTCGTATGCCG9110.15474459498022802No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG7860.13351180203563032No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7430.12620772126268873No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA6860.11652556767995216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)