FastQCFastQC Report
Tue 10 May 2022
EGAF00003664699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences760966
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTGACGACCGAAATCTCGTATG18570.24403192783908875No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15950.2096020058714844No Hit
ATACACATCTCCGAGCCCACGAGACGTGACGACCGAAATCTCGTATGCCG11390.14967817221794405No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9140.12011049113889452No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA7950.10447247314597499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)