FastQCFastQC Report
Tue 10 May 2022
EGAF00003664703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504951
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13970.2766605076532178No Hit
CTTATACACATCTCCGAGCCCACGAGACCCGTATTTAGTCATCTCGTATG9210.18239393525312356No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7390.14635083404132282No Hit
ATACACATCTCCGAGCCCACGAGACCCGTATTTAGTCATCTCGTATGCCG6570.13011163459424774No Hit
CTTATACACATCTCCGAGCCCACGAGACCCGTATTTAGTCATCGCGTATG6080.12040772272953217No Hit
GTACATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG5680.11248616202364191No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG5600.11090184988246385No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA5480.10852538167069677No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5480.10852538167069677No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT5240.1037724452471626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)