FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003664714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003664714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2067
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43220.899854862119014No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT241.1611030478955007No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG150.7256894049346879No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC140.6773101112723754No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC110.5321722302854378No Hit
AGACTAGCGTACGAGCACTATGGTCAGTAATTCCTGGAGGAATAGGTACC90.43541364296081275No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA90.43541364296081275No Hit
CATATGCAGATCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCG80.3870343492985002No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT80.3870343492985002No Hit
ACCTACAACTTGCGCCAATTATCGAGCTGGTAGACGACCAGCGCTGACGA60.29027576197387517No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA60.29027576197387517No Hit
AAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAG60.29027576197387517No Hit
AATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGCAA50.24189646831156267No Hit
GCGTCACACAAAAACGGAACAGGGCTGACGCCGCTACATATATAGGAAAA50.24189646831156267No Hit
GCCCTAACTGCGCAGTTAATAATTCTGGCAATTCGTCTCCACACTAGAAG50.24189646831156267No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG50.24189646831156267No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT50.24189646831156267Clontech Universal Primer Mix Long (96% over 26bp)
CCCCTATCCCCTACGAGGCTACCCGGATCGATGACGCGAATTGGGGACAT50.24189646831156267No Hit
CTCTAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAGGTG50.24189646831156267No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA50.24189646831156267No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG50.24189646831156267Clontech Universal Primer Mix Long (96% over 26bp)
CCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCGCGGTCAAGGCGA50.24189646831156267No Hit
GAAGAACACTGTAGCCGCTTGGCAGGACCATTTTTCTGGTCATCGGGTCC50.24189646831156267No Hit
CATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATA50.24189646831156267No Hit
GAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAGAAAAACGAAATAT50.24189646831156267No Hit
GCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTC50.24189646831156267No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT50.24189646831156267No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATT40.1935171746492501No Hit
CTGAAAAGCTATAACCCGCAGACCCGAGCGAAAGCGGCGGTCCTTACAAG40.1935171746492501No Hit
GCTATAACCCGCAGACCCGAGCGAAAGCGGCGGTCCTTACAAGTCCGCTC40.1935171746492501No Hit
CCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCACGTTGCGAGTC40.1935171746492501No Hit
GTTTTGACTGCGGAAGGAAGCCAAGGCCCACCTAAAGTATGCTGCAAACA40.1935171746492501No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA40.1935171746492501Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGTAAAACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGA40.1935171746492501No Hit
GGGCAAGAGGTCCCGGGGAAACGAAACTGGAAACCGACCGCCGCCATATC40.1935171746492501No Hit
GGCTGAAAGGGGGCAGTGAAGTCGGACGGACTCAACGCCCCTCTTTACAG40.1935171746492501No Hit
ATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCCGAT40.1935171746492501No Hit
GCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGC40.1935171746492501No Hit
CTCACACATAGTACTGACACGTAAGATAGGATGCGACTGCGTATCATATA40.1935171746492501No Hit
TCCCCTGAGACAGAGTCGCTATCGTTATGTCTCCTTCCCGCGGTCAAGGC40.1935171746492501No Hit
TCTTTAATGATGAACTGTCGCCAAGTCAGCTGAAGTCATTGGCAACAGCA40.1935171746492501No Hit
AAACATGATCTTTCTGCTCCGCTGAGAAGTACACCTTTTTGCTAGCATCT40.1935171746492501No Hit
CACTGAACTCGGATAGGTCTCAGAAAAACGAAATATAGGCTTACGGTAGG40.1935171746492501No Hit
CAGTATGTCCCAAGGGGACTTAAGCGCGGTGGCCTCCCCTATCCCCTACG40.1935171746492501No Hit
ATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACCGCCCTTAGAC40.1935171746492501No Hit
GAAGATGATTGACCGCACGCAATTGATATTAGATATTTTTGCAAAGCGGG40.1935171746492501No Hit
GTTAACAAGACGGCGCAGGTTGATGCTTCCAATAAACATGATCTTTCTGC40.1935171746492501No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC40.1935171746492501No Hit
CTTCATAGCTGTCAGCACTCGTCAGGCGGTTGAACCATGTTGATTTCCCT40.1935171746492501No Hit
GAAAAGTACTGACCAGCGTCACACAAAAACGGAACAGGGCTGACGCCGCT40.1935171746492501No Hit
GATCTCCTCATCTTTAATGATGAACTGTCGCCAAGTCAGCTGAAGTCATT40.1935171746492501No Hit
GTCTCAGGGGATCTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGC40.1935171746492501No Hit
ATCGTTATGTCTCCTTCCCGCGGTCAAGGCGAAACCGCAGCAAACTTCCT40.1935171746492501No Hit
CTTTACAGCAAATACCAGCGGCCCTGACCCCGGGGAACAGTCGCATGACG40.1935171746492501No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG40.1935171746492501No Hit
ATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTG40.1935171746492501No Hit
AACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTATTAGGA40.1935171746492501No Hit
CCCCTCGTTTATGAACTAGCCTATCGCAGACGGTATCAACAGGAACATCC40.1935171746492501No Hit
GGTATACGGACAACTGATGGACCCACGTTGCGAGTCCAGTAAATCAGGAC40.1935171746492501No Hit
ACGCAGAGTACATGGGTGGGAATTCTCCAGATTACTTCCATTTCCGCCCA40.1935171746492501No Hit
GGCTATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAG40.1935171746492501No Hit
GTATGTCCCAAGGGGACTTAAGCGCGGTGGCCTCCCCTATCCCCTACGAG30.14513788098693758No Hit
CAAATGAGCATCCTAGTCACCGCGTTTAAAATGAACCTGCCGGCTGATCG30.14513788098693758No Hit
ATCGCAGACGGTATCAACAGGAACATCCTCGTGTTAGATATTGAGGCTGC30.14513788098693758No Hit
ACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGA30.14513788098693758No Hit
GTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGACCCGAGCGAAA30.14513788098693758No Hit
GTATAGGGACGCCCCCTGCTCGCGTTACTGCCAAGCGAGCGTGGTGTGGT30.14513788098693758No Hit
GGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGGCTAGACT30.14513788098693758No Hit
ATCCTAGTCACCGCGTTTAAAATGAACCTGCCGGCTGATCGTTTTTAGGA30.14513788098693758No Hit
GATGTGTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGACCCGAG30.14513788098693758No Hit
CCGTAAGCCTATATTTCGTTTTTCTGAGACCTATCCGAGTTCAGTGCGAC30.14513788098693758No Hit
GGCAAAGGGGCAACTCGAGCTAATCTCCCCAGCGGCTAGCATGTGTAGTG30.14513788098693758No Hit
AACCAGATGTGTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGAC30.14513788098693758No Hit
GTCCTACACTATCTTGGATATGATATATGCACTACACATGCTAGCCGCTG30.14513788098693758No Hit
CTGTATGCCCCTGTGTTATTGCAGCGTCTCGATTAGGGGGAAACCTTGTC30.14513788098693758No Hit
ATCTTACGTGTCAGTACTATGTGTGAGTGCTCCGCCCTAGTGCTGATGTA30.14513788098693758No Hit
TGTCAGTACTATGTGTGAGTGCTCCGCCCTAGTGCTGATGTATGCCCCAT30.14513788098693758No Hit
GTGTGGCACCAGCGCGGCTACTCCGATAGCGACTGGACACAACATGGCAG30.14513788098693758No Hit
CCATATGCCTCGGGAATAAGCTGACGGTGACAAGGTTTCCCCCTAATCGA30.14513788098693758No Hit
ATTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCCTTG30.14513788098693758No Hit
GAAGCCAAGGCCCACCTAAAGTATGCTGCAAACATATGCAGATCCCCTGA30.14513788098693758No Hit
GTTGATACCGTCTGCGATAGGCTAGTTCATAAACGAGGGGCGATGCCCGG30.14513788098693758No Hit
AGCCAAGGCCCACCTAAAGTATGCTGCAAACATATGCAGATCCCCTGAGA30.14513788098693758No Hit
ATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCGTAA30.14513788098693758No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA30.14513788098693758No Hit
ATCCAAGGAGCAAAACTGCGTCGGTTTAGCTGAGATTGCACCGTTGTTAT30.14513788098693758No Hit
CGTTATGTCTCCTTCCCGCGGTCAAGGCGAAACCGCAGCAAACTTCCTCA30.14513788098693758No Hit
AACGAATAGCTCGTAACCAAACATGCACAGCGGTCAAACAGTATGTCCCA30.14513788098693758No Hit
CTCGTGGAAGAGCTTGAAGCTGATCTCCTCATCTTTAATGATGAACTGTC30.14513788098693758No Hit
GCCACGAGTCACGGGGTCTAACGCCTACCAGTACTGATTGCCGAGCAAAT30.14513788098693758No Hit
AGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGC30.14513788098693758No Hit
TATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATGCAGTGTCCA30.14513788098693758No Hit
CAACTTTACGTCGGATTAGCTCTTCTTTGATTAGCATGAAACTCCAAGGT30.14513788098693758No Hit
GAACTCGGATAGGTCTCAGAAAAACGAAATATAGGCTTACGGTAGGTCCG30.14513788098693758No Hit
GGATGAGTCCCTCAGCGTGACGCAGTAAACTAGTAGCATCCCGATCTTTT30.14513788098693758No Hit
CATGGGCCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTA30.14513788098693758No Hit
TCCTTATACAGTACGCAGCGACCGTAACGCTGTATGAGATCGCCGCATCC30.14513788098693758No Hit
ATATCTAACACGAGGATGTTCCTGTTGATACCGTCTGCGATAGGCTAGTT30.14513788098693758No Hit
CTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCTG30.14513788098693758No Hit
GTATAAGGATGCTCTGTGAACTGTCATCGGTCCGATCAATTAGTCTAGTG30.14513788098693758No Hit
GCCTAGTACGCGCGGGGCTCGAAAGGTACTAGGCCCTTATAGGGGACGAA30.14513788098693758No Hit
GCAAATACCAGCGGCCCTGACCCCGGGGAACAGTCGCATGACGAGGCAGT30.14513788098693758No Hit
CTCAACGCCCCTCTTTACAGCAAATACCAGCGGCCCTGACCCCGGGGAAC30.14513788098693758No Hit
GAGGAATAGGTACCAAGAAAAAAACGAACCTTTGGGTTCCAGAGCTGTAC30.14513788098693758No Hit
CTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATCC30.14513788098693758No Hit
TTCCAGAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAGAAAAAACG30.14513788098693758No Hit
CATCTAGGCATGGAATCTTATGCCAGCTAACGGAACAAGCTTTGTGCCAT30.14513788098693758No Hit
GTACAGGGGGACGAGTCCTACACTATCTTGGATATGATATGGCGCACTAC30.14513788098693758No Hit
CAGTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGAT30.14513788098693758No Hit
TATCAACGCAGAGTACATGGGGGAATTCTCCAGATTACTTCCATTTCCGC30.14513788098693758No Hit
GCCTAGATGTGATACACGTTTCTGGAAACTGCCTCGTCATGCGACTGTTC30.14513788098693758No Hit
CCTCGGGGAGCTTGATTGATAATTCTGTATAAGGTGATCGCAGGTTGTGC30.14513788098693758No Hit
CAGTAAACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTAT30.14513788098693758No Hit
GGATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAGTAAACTAGTAGC30.14513788098693758No Hit
AATTTCTAGCGTCTTCTCTTCATCAGAGTAGATTTTCAATGCAAGCTTTT30.14513788098693758No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGACTGATCGTGGTTTTACTAGG30.14513788098693758No Hit
ATATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATGCAGTGTCC30.14513788098693758No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC30.14513788098693758Clontech SMART CDS Primer II A (96% over 26bp)
GCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGC30.14513788098693758No Hit
GGTCAGTAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAACCTTTGG30.14513788098693758No Hit
GTCGCATGACGAGGCAGTTTCCAGAAACGTGTATCACATCTAGGCATGGA30.14513788098693758No Hit
GTGTCCAGTCATGACCTCGATCCATCGCGTATAGGGACGCCCCCTGCTCG30.14513788098693758No Hit
CCTGTTGATACCGTCTGCGATAGGCTAGTTCATAAACGAGGGGCGATGCC30.14513788098693758No Hit
ACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGC30.14513788098693758No Hit
GGTGTACACCGCCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCA30.14513788098693758No Hit
ATCCTGAATAAATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTG30.14513788098693758No Hit
GGCTAGACTAGCGTACGAGCACTATGGTCAGTAATTCCTGGAGGAATAGG30.14513788098693758No Hit
ATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAGATCA30.14513788098693758No Hit
GTCACGGATGTATAAATCGCTCGAGAATCACACACAGTCGTCTAAGACAC30.14513788098693758No Hit

[WARN]Adapter Content

Adapter graph