FastQCFastQC Report
Wed 8 May 2024
EGAF00003665198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1241604
Total Bases124.1 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19250.1550413819543107No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12990.10462272995254525No Hit
GTACATGGGACACTTTGTATGGCAAGTGGAACCACTGGCTTGGTGGATTT12890.10381732017615923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)