FastQCFastQC Report
Tue 10 May 2022
EGAF00003665231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences347516
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9030.25984415106067055No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATGCGATTTAATCTCGTATG8880.25552780303640693No Hit
ATACACATCTCCGAGCCCACGAGACTGATGCGATTTAATCTCGTATGCCG5800.16689879027152707No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA4930.141863971730798No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4920.14157621519584712No Hit
ACACATCTCCGAGCCCACGAGACTGATGCGATTTAATCTCGTATGCCGTC3900.1122250486308544No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3870.11136177902600168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)