FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003665451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCG33.061224489795918No Hit
GCGCGTGCCCCGCCGCGCGCCGGGACAGGCGGGGGACCGGCTATCCGAGG33.061224489795918No Hit
GATCTCACACGATGCTTTGTAGGAAAAGTGCACGCAGCCGGCGAAGCCAT22.0408163265306123No Hit
GATCCTGGTAAGAAAACAGTCTGCCAGTTCAGAAATGTATGCTGAGAATG22.0408163265306123No Hit
GAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTA22.0408163265306123No Hit
CGTCACTGATTTCAGGCTTTTTCAAACTGCTGGTGCTGTGTACAGGAGGG22.0408163265306123No Hit
GTACCATGTAGACAACAGATAATTTATAGCGACTTCTTCTGCAGGCAGCC22.0408163265306123No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA22.0408163265306123No Hit
GACATAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGGTC22.0408163265306123No Hit
GGAAAGAGAGAATGGCGAAGTAAATGCCCCAGATGAGTGCCATCGGGATG22.0408163265306123No Hit
CTACTGGCGCTGGGCTACACCGTCGTCATTCCCGACACCGAGGGCCCGAA22.0408163265306123No Hit
CCATAAATGGAAGCCTGCATCCCATTCACCCATTTTACCCATCTCGCCAC11.0204081632653061No Hit
CAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCG11.0204081632653061No Hit
CTGCGATGACTGCATTCAACTCACAGAGTTGAACAATCCTTCTGATGGAG11.0204081632653061No Hit
GATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTT11.0204081632653061No Hit
GCCAGTTACCGCGAGCGTACAGAAGAAGTCGATGTCGCAGCGCTTGCAGC11.0204081632653061No Hit
CTTCTTAGAGGGACAAGTGGCGGTCAGCCACCCGGACCGCGAAGGGCCTC11.0204081632653061No Hit
TTTCCATATTATTAAACCCATTGGCCTATTTTAAGTCCTCAGGTTCTACG11.0204081632653061No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGTGAAGCAGTGG11.0204081632653061Clontech Universal Primer Mix Long (96% over 26bp)
CCATGACCCGCCGGGGGGGGGGGGGGGGGCGCGAGGCGTTGGGGTGGGTG11.0204081632653061No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGA11.0204081632653061No Hit
GTCCATGGGGCTGGTGGCTGTCATGCTAGGAGGAGCTGTTCAGTTGAAGT11.0204081632653061No Hit
ATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCAT11.0204081632653061No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACTATTGCGTTTATACCAA11.0204081632653061No Hit
GTACATGGGAAGCAGTGGTAACAACGCAGAGTACTTTTTTTTTTTTTTTT11.0204081632653061Clontech SMART CDS Primer II A (96% over 26bp)
CCTGGCCAGTCTGAAATAGCAACCTCAGTGGAGATATCTTCAGCCTCCCC11.0204081632653061No Hit
TTGATGGACTGCAGCCCAGTGACTATCCAGTCCACAGCAGGAAGGGGTGA11.0204081632653061No Hit
TCCATAAAGTCCACACGGTCCTCAGCCAGCCAGTGGAAACATTTGAGGAA11.0204081632653061No Hit
GCACACTCATCTGAGTGCCTTGTCCCTGCCGGTAAACACTGGCTGTCTCT11.0204081632653061No Hit
CTATTTCACAGGAAGCACTGCAGGCTATTTGCTTAATATTGTCCTGGGAT11.0204081632653061No Hit
CAACACATACGGTGTAAAGATTGGAAAGGAGAGGAGAACATGGCTGTCGA11.0204081632653061No Hit
CCTGGCTAATTTTTTAAGAGAATTTTTTTTGCAGAGCTGGGGTTCTCACT11.0204081632653061No Hit
TTATACTACAGGTTTTTAATTTAAAACGTCTTGTCACTGTCTCTTATACA11.0204081632653061No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC11.0204081632653061No Hit
GCGCCAGCACGCTCACCCGATCATGGTCGCTGTGTCAGCAAGTTGTGGGA11.0204081632653061No Hit
ATCCTGACTTGGTAGCTGGATCCTCAGACACGTCCTTTGGTAAGGCTTCA11.0204081632653061No Hit
ATCTCGGCTCACTGCAACCTTTGCCTCCTGGGCTCAAGCAATTCTGCCTC11.0204081632653061No Hit
GGGTACATGAGCAAGCGAGTGAGGTGTCCAGCCACAGTGCACAGCCAGGC11.0204081632653061No Hit
GTGCGCGCGATGCCCAGCGCGGCCATGCGGAGCGGCAGCGTGAGCTTCGA11.0204081632653061No Hit
AGGCGTGGTGGCTCACAAATATAATCCAAACACTCTGGGAGGCCGATGTG11.0204081632653061No Hit
GATCAGATGTCCTCTCAGTGGTCCTGAGTCTCATCCCTGAGCCCTGAGAG11.0204081632653061No Hit
GCTTCACTGTGTCTCGAGCACTGATATTGGAGAAAAGCACATCCGGCATA11.0204081632653061No Hit
GAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACCCGGC11.0204081632653061No Hit
GGCGACGTAGGCCAGCATCGAGCCCAGCACGAGCGGCAGGAAGAGGAGCC11.0204081632653061No Hit
GCGCAGGTTGATGCTTCCAATAAACATGATCTTTCTGCTCCGCTGAGAAG11.0204081632653061No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.0204081632653061Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAGAGTACATGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGT11.0204081632653061No Hit
GCCTGTGCGGTGCCTTGCAGGGCAAAAAACACATCGCCATTTTTAACGCT11.0204081632653061No Hit
TTCCCGTGTTGTGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCC11.0204081632653061No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.0204081632653061Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCA11.0204081632653061No Hit
GCTTAAAGTTTTATATCTTTGTTTCCCATATGAAAATGTAAGTTACCTCC11.0204081632653061No Hit
GAGCAAGAGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAGAGCTA11.0204081632653061No Hit
GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTG11.0204081632653061No Hit
TCCCCGCCCCTTGTCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC11.0204081632653061No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG11.0204081632653061No Hit
AGGCTGTTGTGATCTGTGACATATGGGTTATATTATTGTGTCTTTGTCAA11.0204081632653061No Hit
GACGTCCCACATGAGTGGCCTACTCCTGTTAACCACCAGATGTATGGCTG11.0204081632653061No Hit
TCAGAAGGTCCTCTGTCTTGTCTTCTTGCCCTGGCTTTGTAACAGGGGAA11.0204081632653061No Hit
CCAATAAACAGCTGTGCCCTACTGTGATAGATTTTCCAAACAAAAATACC11.0204081632653061No Hit
CAGTGGTATCAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACT11.0204081632653061No Hit
GTGGCATTTCTTCTGGAGGCTGTAGAGGAATCTGTTTCGTTGCACTTCCA11.0204081632653061No Hit
GACATGGAGACACTGGAAGGGGAGGCAGGGAGGCGGATGAATACCCCAGG11.0204081632653061No Hit
CTGCTCAATGAAAAGAAAGGTTCAACTCTGTGAGATGAATGCACACATCA11.0204081632653061No Hit
TTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAG11.0204081632653061No Hit
GTACCCAAGCATGCCCAAGTTGCGGAGAGCGCCTTATTCGTTCCCCGCGA11.0204081632653061No Hit
GGAGAACAAGGGGACCTAGTAGCATGGCTGTATTCAAGTCCAAAGGCCTG11.0204081632653061No Hit
GAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG11.0204081632653061No Hit
ACAGTGACTGTCCTGCGGCTCTGTGACGGCTCGGCTGCCCCTGCCTCCAG11.0204081632653061No Hit
ATACCAGCGAATCAAGCAACAAATCGGTAAATATTTATTGGTTTGGCAAT11.0204081632653061No Hit
CTTAAAGACAAGAATTTTCAACCCAGAATTTCATATCCACCACACTAAGC11.0204081632653061No Hit
GGCCATAGAAGGCGCCGAGCTGGTCGAGGTTCGGGCCGCGCGCGAAGGCG11.0204081632653061No Hit
GCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGTGGC11.0204081632653061No Hit
GGATTACAAGATCCACCAGGGCTCTGAACAACTGCGCTAAGAAGCCTTCT11.0204081632653061No Hit
GTGTTTAATAAATTTGATTCTAATTTTTCATTCAATATAACTATGTTTGC11.0204081632653061No Hit
GCTCCGCCTTGACCTCGTCGTCGTCGACCAGGCGGCCCTGCTCGGTGTCG11.0204081632653061No Hit
GGATAAAATAAAATTGAACAAATTAGGCAGCCAAGCTCTGGAACTAGTAA11.0204081632653061No Hit
CCTCGATATAGGTGACCTGCCCCGGACCCTCCAGCGCGGGCACGCGGACC11.0204081632653061No Hit
GTACTGCCGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAAGG11.0204081632653061No Hit
ACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG11.0204081632653061No Hit
GTCAATGAGGTTCCTGATAAGAGGAACGGGGAATAATGCCCTTTTAGTCC11.0204081632653061No Hit
ATAGATATATCTCCATGGGATCCTGCAAATAAAACAAAGAGGGAATTCTA11.0204081632653061No Hit
TCTTAATTCAGTGGTTCTCAACCCTGGCTGTGCATTAAAATCACTCACAA11.0204081632653061No Hit
CCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACC11.0204081632653061No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTT11.0204081632653061Clontech SMART CDS Primer II A (100% over 26bp)

[OK]Adapter Content

Adapter graph