FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003665471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCTGGCGAAGCACTTCGGCTTCCAAGCTGTAGAAGGAACTTGCCGCA37.6923076923076925No Hit
CTCCAGGAACGCCCGTTCCAGCAATGACGACGAATCCGTTTCCGAGCTCG25.128205128205128No Hit
AGCTTAGCCCCTGGTCCGAATTTGCGCGACCACCTCTGTGGCTGTCTCTT25.128205128205128No Hit
CTCCCGCAGTGCTGCAGTGGCGTTGCTAGCGGAAGCGTTCGGATTTACCT25.128205128205128No Hit
GCTTGGGCAAGAGCAGCGTCGCGCCGGCGACCAGGTAGTCGGCCGCCCCG25.128205128205128No Hit
GGCCGTACGCGCGGCTGCTGCTGGTCGGGGGCGGGCCGATGGCTGTCTCT25.128205128205128No Hit
GCAAAAGCCGAGCTATTGCGTAGCTCAAACATAAATGAAACTAATTGAAT12.564102564102564No Hit
GTAGTTAACCACCACGGTATCGCTGTCTTTAGGGGTTTCACCTGTCTCTT12.564102564102564No Hit
CTGTTGCTCAGGCTGGACAGTGGCCGTGATCTCAGCACACTGCATCCTCC12.564102564102564No Hit
GTCGGGACCATCAGGTGTCCGCCGCCGATCAGACCGACGGCCGTCAGCAT12.564102564102564No Hit
CCAGTCGAAGCCGTCGTGGAGGTGCCTGCGTCGGCGGCCGACGTGAACCA12.564102564102564No Hit
CGCTGAACCTCTTCATCGTCGGCTACCTCGAGCCCTTTTCCCACTACCGC12.564102564102564No Hit
GGGTATGGAAGTGGAACTGCTTCAGCGTGAAGGTCTCGCCGTCCAGCGTC12.564102564102564No Hit
ACCTTGGACATAACCTCTCGGTAGATGAAGTTGTGAACCTGTCTCTTATA12.564102564102564No Hit
ATTTATCACACAGTGTACTGGCGTCTGAAGTTGTCCGAACCGGTGAGCAG12.564102564102564No Hit
CCCACGCGCACCTGCCCAGCCTCGTGCTCGCCTTCGCGCAGGCTGTTCAC12.564102564102564No Hit
CAATATTGGCCGCCTACGGTGAAGGCGACCGGGCCCGCCTTGCCGGCGAA12.564102564102564No Hit
CCCCGTACGCGCAGAACCTGGCCATCATCGGCCCTGTCTCTTATACACAT12.564102564102564No Hit
ATATTAAATCATGAAGAGCACTCTATGCAAAGAGTCTTTCGCTATGCAAC12.564102564102564No Hit
GACCCGGGCGGCCACCGATCACACGTCCTCGACGCTGGAGGGCTCGCGGC12.564102564102564No Hit
GCCCTCCAATGGTGACGACGGCGACGACGAGGAAGGCGAAAGCCCGCCGA12.564102564102564No Hit
CATAAGGCACGGCATCAGGCGCCATGTCGGCAACAATCTCGCTCTGCCGC12.564102564102564No Hit
ACGCCGCGGAGATCGAGCGCCGGCACTCCGACGGGCGCGGCCTGCTCGCC12.564102564102564No Hit
GGCGACGGGCGCGGCTTTCTGTTCGCGCAGCTAAGGGATGGTCGCTGTCT12.564102564102564No Hit
ATATGAATGAACTTAAAATTCTACTGCCCTTACTGCCCTAATAAACCAAC12.564102564102564No Hit
AGCTCGGACCGCTGCGCGTGCTCTACGACATCGACGGCGAGCTCCCGCAG12.564102564102564No Hit
CTACCGCTCGGCAACAACAATCGGCCTATCCCATGGTTAAGCCGCTGGTT12.564102564102564No Hit
GAGCAGCACCTGCAACCTGCTCACGAAATCACTGAGTCTGTCTCTTATAC12.564102564102564No Hit
ATGGAAGGGAACAACAGCCCGCTGGCTAACCGTCAGCAGATCCCGTTCGC12.564102564102564No Hit
GACCGCCGCCGATAGGTAGCTGCCGAACGCCGAGGCGTGCTTATGGTCTT12.564102564102564No Hit
TCCCAGAACTTCCGCTCCGCGCCCCAGCTGTCTCTTATACACATCTCCGA12.564102564102564No Hit
GAATACACGCTGTTTTTCCGGATGGGCGACTTTTACGAGATGTTCTGGGA12.564102564102564No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)