FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003665497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT55.681818181818182Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG33.4090909090909087Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA33.4090909090909087Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTTAACCGTCACAGGCGCAGCAAGTAATGCCATTAAATCGAAAGACGGC33.4090909090909087No Hit
ATCGAACTCCCCTCCGCGTGGCGCGACCTTTTCGCTAAGTCCGGCCGGGC22.272727272727273No Hit
TATCACTACCGAGGACGCCGAGGCTGTGATGACAAAGTTCCGCTCTCGTC22.272727272727273No Hit
GAACGAAGGCCGTCGTCACTGTGACTGGTCTTCCCGAAGGGTTCGACCCC22.272727272727273No Hit
CCCCACCACGCCCCGGACCGGCCTGCCGGTCGTCGCCGAGATCGTCCGCT22.272727272727273No Hit
GACCACCTTCACCAGCGTTCATGAGCCAGTTAGCAACGCGGAAGATACGG22.272727272727273No Hit
GGTTTAAGACCCAAGGAACGCTGCTTAGAAATCTTTGTCCAGTCGTCAAG22.272727272727273No Hit
TGCTGAGGCAGGAGGATCACTGGAGGCCAGGAGTTTAAGGCTGCAGTGGG11.1363636363636365No Hit
TATCAACGCAGAGTACATGGGACGCAGTGGTATCAACGCAGAGTACATGG11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
ATAGGTAGTGTGGTCACAGCCCCCGTTAGAGGGGAACAAACTTGCCAAAG11.1363636363636365No Hit
GGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAACCCCTG11.1363636363636365No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.1363636363636365Clontech SMART CDS Primer II A (96% over 26bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGCAAAATGGAAAATGACAATACTGAAATGCAAACTAATAGAATACCAGC11.1363636363636365No Hit
AGGTGTAGGAGGCCTGCAGGTACAAATTGACCAGGCTGTTGACGGCTGCC11.1363636363636365No Hit
GGGACGCAGTGGTATCAACGCAGAGTACATGGGACGCAGTGGTATCAACG11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CTCCTAAGTCTTTTTGATTTTTAAAATACTTTGTTTGCCGTGCATGTTTT11.1363636363636365No Hit
GATCACCGTGGTGCCACTGGAGCCGACCCAGCCGCGGGGGATGGCGCCGG11.1363636363636365No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGACGC11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT11.1363636363636365No Hit
CGGCTGTCCTGTGTGCATCGAACACAAGAAGTACAGCCGCAATGCTCTCC11.1363636363636365No Hit
GTATAGGAACTTTGTCATATCGTCAAACTTGGAAACATTTACATGATGGC11.1363636363636365No Hit
GCATCAACCTCGGCTGGGTCGAGTTCGTCTGCGAGCCGTCAGCCCGCTGA11.1363636363636365No Hit
TGACCGTGGCCGGCGCGCTCGAGCCGGAGTGCATCCTGGGCGTCGAGACC11.1363636363636365No Hit
CCCATGTACTCTGCGTTGATACAACTGCTTCCCATGTACTCTGCGTTGAT11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC11.1363636363636365Clontech SMART CDS Primer II A (96% over 26bp)
GATCTGGAAAGAGCACATGAGGGTCTCGTCCACACTCATCATGGCGCCAG11.1363636363636365No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
TTCCTGCAAAGTGCCTTATAATGTAAATACAATGAAACAATGTGCGGCAC11.1363636363636365No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG11.1363636363636365No Hit
GCATCAACCTCGGCTGGGTCGAGTTCGTCTCCGAGCCGTCAGCCCGCTGA11.1363636363636365No Hit
ACCATATTCTCGCGGCGATCCTGTTCGAGATGACGATGGATCGCAAGAGC11.1363636363636365No Hit
ATATATTCCTTTCAACATTCTGAGACAGCTCCTTAGGAGGCAAATAATCC11.1363636363636365No Hit
CACTACGTCTTAACCACGCACCCACGAAGAACTCAAGTCAAGAGAGAGTC11.1363636363636365No Hit
GATGGCTTCGCGCGCGGCGGCTCGCACCTGGATGCGGTCCGAGTTCACGT11.1363636363636365No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACAGGGGAAGCAGTGGTATCAACG11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
GAATAACCCTGTGGCACACCAATAATGTCTGAATGTCCTGCTAGAGTACC11.1363636363636365No Hit
CTACATTGCCTACAGTGACGAAAGTGTCTACGGTCTGTGAAGCTGCTGCC11.1363636363636365No Hit
GTATGTGGTGGTCATTTGTGCACTATAGGTGAACGTCTAGTGTACATCCG11.1363636363636365No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
GGTCGACAGCGAGCAACTGCGCGATGGCAACGGCATCACCGTGATCAACC11.1363636363636365No Hit
GCCTGGGCCGATTCATGAACTGGACGGGTCCCACCTTCACTGATTCCGGT11.1363636363636365No Hit
AGTACGCGCCATAAGAACGACGAAAGCAACACCGACCAAGCCGGTGTACT11.1363636363636365No Hit
GTACTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTGGGGATAAACCAAAT11.1363636363636365No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CCTTCATGGCGTCATGGCTGGTCACAGCGGGCCCAAGGGTATTCACAATC11.1363636363636365No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGATAACAAA11.1363636363636365No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
ATGCGACCACCGACGGGGTGGTACGAGCACCCTCAGCGTTCGGGATGACA11.1363636363636365No Hit
GATAGAAGATTGGCTTACAGCATGTGGAGATAAGTAACCTTTTTGTACCA11.1363636363636365No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
GACGACAGCCGAAATCTTGATCGAGACGTAGTCAACATCCTCGCGGGCCA11.1363636363636365No Hit
ATGGTCGAGGAGTCGCTAGCGGCAATGGGTATCGACGCAAATGTTTCGGG11.1363636363636365No Hit
GGGCTGGGGCGGCTGGTGCCGACTTAGTTGGTCATGTGGTAGCTCTCATC11.1363636363636365No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT11.1363636363636365No Hit
GTACATGGGATGTTGTTGTGGGGCTGAGGCGGCGCCGGCGGAGCCCTGAG11.1363636363636365No Hit
GCTTCCCATGTACTCTGCGTTGCTACCACTGCTTCCCATGTACTCTGCGT11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCTTATTTGAGTCAAAAGTGGGCATTGACGCCATCGCCAGGACCTCACCA11.1363636363636365No Hit
GGTCTACGGAATGAGAGCCGAGGCAAGTCAAGGCAACATCACGTGGGTCC11.1363636363636365No Hit
TATCAATACCGAGGACGCCGAGGCTGTGATGACAAAGTTCCGCTCTCGTC11.1363636363636365No Hit
TCAACGCAGAGTACATGGGAAGCAGTTGTATCAACGCAGAGTACATGGGA11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CTAGAATGACAGCCACTAACACATGTGGGTGTTCATTGTTTCAGTTTCTC11.1363636363636365No Hit
ATAGCCGCCAGCAGGGTCACAATGCCGAAGCCCATGTGCACGTCGCCGAG11.1363636363636365No Hit
TATATGAGGTGACGGCGTAGCCGAGCGTGTTAGCGGCCGCGACTAGGACG11.1363636363636365No Hit
GGTGTGCTCACACGATAAACCCTAGGAAGCCAATTGATATCATAGCTCAG11.1363636363636365No Hit
GAATAACCCTGTGGCACACCAATAATGGCTGCATGTCCTGCTAGAGTACC11.1363636363636365No Hit
TTGGTGAATGGCACGACCACGTCGTCGTAGCGGCCTTCGATGACTGTGTA11.1363636363636365No Hit
AAGGGAAGGCTCAGTTGGGAATGTACATTCAGTCGAGTCCTTCGAGTCGG11.1363636363636365No Hit

[OK]Adapter Content

Adapter graph