FastQCFastQC Report
Tue 10 May 2022
EGAF00003665531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518777
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGAACTGTACGCTGTACCTGCATCAGCATTAGTAATCAACCTGTTA15890.30629731079057093No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT6760.1303064707957369No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA6540.12606572766333124No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6530.12587296661185826No Hit
GTATGTAGGTAGCCACTGAAAGAATTTGGGCCCCTTGGGAGGATGGCAGT6080.11719871929557402No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC5910.1139217814205333No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT5630.10852447197928976No Hit
GTACCTGCATCAGCATTAGTAATCAACCTGTTAATCCAAGGTCTTTAGAA5370.10351268464099218No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA5230.10081402992037042No Hit

[OK]Adapter Content

Adapter graph