FastQCFastQC Report
Tue 10 May 2022
EGAF00003665915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12883
Sequences flagged as poor quality0
Sequence length140
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA12149.42327097725685No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT8186.349452767212606No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA440.3415353566715827No Hit
GTACATGGGGACGTGGCCGCGAGGATGACGGCCGAGGGCATTCCCGACAC380.29496235348909416No Hit
GTACATGGGCTTCAGCCTGCGCCTGCGCAATGCCGAGAAGTCGGTGACCG360.2794380190949313No Hit
GTACATGGGAGCGTGGTCAGCGTCATCGACCAGTGGTAGAGCGCGAGGTT320.24838935030660558No Hit
GTATCAACGCAGAGTACATGGGCTTCAGCCTGCGCCTGCGCAATGCCGAG310.2406271831095242No Hit
GTACATGGGAGGGCAGCAGGGTGGCTGCGACCACGATGGACGCCGCCACC310.2406271831095242No Hit
GTACATGGGGCCGCCGAGCGCCAGCCCCTGCGCGAAGCGCAGGACCGCAA290.22510284871536135No Hit
CACTCACACACACACACACACACACACACACACACACACACACACACACA280.2173406815182799No Hit
CACACACACACACACACACACACACACACACACACACACACACACACAAA250.19405417992703564No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGT240.18629201272995422No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGT230.17852984553287277No Hit
GTACATGGGCGTCGATCATCTGGCCGTGCTGCAGCGTGTGGCGGTGGTCG230.17852984553287277No Hit
ATATTACGCTCAGGCAGATCAAGGCATTCCTGGCCGTCGCGGACACGGGC210.16300551113870992No Hit
GTACATGGGGAGCAAGACGGGGACGGGGTGCGACTCATGCAGCCCTCGCC200.1552433439416285No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT190.14748117674454708No Hit
ACGCAGAGTACATGGGCTTCAGCCTGCGCCTGCGCAATGCCGAGAAGTCG190.14748117674454708No Hit
GCTTCAGCCTGCGCCTGCGCAATGCCGAGAAGTCGGTGACCGACGAGCGC170.13195684235038424No Hit
GAGTACATGGGCTTCAGCCTGCGCCTGCGCAATGCCGAGAAGTCGGTGAC170.13195684235038424No Hit
TCCCGACACCGAGCCGCTCGTCGCCTGGGGATTCGATCCGATCTACTTCG170.13195684235038424No Hit
ACGCAGAGTACATGGGAGGGCAGCAGGGTGGCTGCGACCACGATGGACGC160.12419467515330279No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA160.12419467515330279No Hit
GTGGTAGGTCTCGAAGTCGGCTTCGTACTGCGCGGGGGCGGTCACCCAGA160.12419467515330279No Hit
CACACACACACACACACACACACACACACACACACACACACACACAAACA160.12419467515330279No Hit
ACCCTGGCCTCCACGCCGTGCGAGCCGCCGCCCAGCGTCATGTCGCCGGG150.11643250795622137No Hit
GTATCAACGCAGAGTACATGGGGCCGCCGAGCGCCAGCCCCTGCGCGAAG140.10867034075913995No Hit
TATCAACGCAGAGTACATGGGAGGGCAGCAGGGTGGCTGCGACCACGATG130.10090817356205853No Hit
GTACATGGGCCAGCTTCCCGACCGAGGACGGCCTCGTGCGCTCGGTGGCC130.10090817356205853No Hit
GCCATGGGCCGCGCCATCGTGCGCGACCCGCAGGTTTTCCTCTTCGACGA130.10090817356205853No Hit
GTCATGGCCTCGATCTGGTCGTGCGTCACGTAGACGGTGGTGGTCTTCAG130.10090817356205853No Hit
GTATCAACGCAGAGTACATGGGAAGCCTGGGGATCCCCGCATGGACCGCG130.10090817356205853No Hit
CACACACACACACTCACACACACACACACACACACACACACACACACACA130.10090817356205853No Hit
CACACACACACACACACTCACACACACACACACACACACACACACACACA130.10090817356205853No Hit
CACACACACACACACACACACACACACACACACACACACAAACACACACA130.10090817356205853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)