FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003665993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003665993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4871
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA190.390063641962636No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.390063641962636No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG170.34900431122972697No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT160.3284746458632724No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC150.3079449804968179No Hit
GAGTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTG130.2668856497639089No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT130.2668856497639089No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA120.24635598439745432No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC110.22582631903099978No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC110.22582631903099978No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT110.22582631903099978No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA90.18476698829809074No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.18476698829809074No Hit
ACGCAGAGTACATGGGCAGAGTCCCTGAACTCTCGCTTTCTTTTTAATCC80.1642373229316362No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT80.1642373229316362No Hit
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCAGGGTCAGGGTTGT80.1642373229316362No Hit
TATCAACGCAGAGTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGC80.1642373229316362No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA80.1642373229316362No Hit
GTGCCAAGTGTGCCCAGGGCTGCATCTGCAAAGGGGCGTCGGACAAGTGC80.1642373229316362No Hit
GTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTT80.1642373229316362No Hit
TATCAACGCAGAGTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACC80.1642373229316362No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT80.1642373229316362No Hit
GGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT80.1642373229316362No Hit
CCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCC70.14370765756518167No Hit
ATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGTACAT70.14370765756518167No Hit
GTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCTGGGAG60.12317799219872716No Hit
GCCTACAGAGTCACACTCAATCCTCCGGGCACCTTCCTTGAAGGAGTGGC60.12317799219872716No Hit
CTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCAAATGCA60.12317799219872716No Hit
GTTTTTATTAGCAGGTAAGTCATGATTTAGGATCCTGGGGTGGGGATCAC60.12317799219872716No Hit
GGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGA60.12317799219872716No Hit
CGTGCAACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCC60.12317799219872716No Hit
CCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTC60.12317799219872716No Hit
CACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGA60.12317799219872716No Hit
GTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCTGG60.12317799219872716No Hit
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGT60.12317799219872716No Hit
TTTATGAACTAGCCTATCGCAGACGGTATCAACAGGAACATCCTCGTGTT60.12317799219872716No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG60.12317799219872716No Hit
CACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCTCCTGCA60.12317799219872716No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.12317799219872716No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG50.10264832683227264No Hit
GAATATAGCAAACGGTCAGGGTCAGGGTTGTACATAAAAAATCCAGGTTT50.10264832683227264No Hit
ATCATATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAG50.10264832683227264No Hit
GTACATGGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACC50.10264832683227264No Hit
GAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGT50.10264832683227264No Hit
CAGCGACAGAGAGGCCCTGGGAATCTGAAGGTTGAGCCTGCCTCCTCCCT50.10264832683227264No Hit
ACGCAATATATTGCAACCTAAAAATGAAGCTGATCGTCAGGCAGAAAAAC50.10264832683227264No Hit
ATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCA50.10264832683227264No Hit
GACCAGTTATTCAAGGTGAAACTCGTTATTTTGTAAAAGAATTTGAAGAA50.10264832683227264No Hit
CTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTG50.10264832683227264No Hit
GTTCTAGGAAAGCAGAAGGGATTCCCGCGATGTTTTCTTGTGCACTTAGC50.10264832683227264No Hit
TTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGA50.10264832683227264No Hit
GTACATGGGAGAGCGGACAGGGCGATGGCAGGTTCGCCGGGTGTGAGGCT50.10264832683227264No Hit
GACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGAC50.10264832683227264No Hit
GTATCAACGCAGAGTACATGGGGTTACACCCCGCGCAGGATTCGGACGGA50.10264832683227264No Hit
GTACATGGGCGGGCATCGCCCCTCGTTTATGAACTAGCCTATCGCAGACG50.10264832683227264No Hit
ACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCG50.10264832683227264No Hit
GTACATGGGGAGCGTGACCCAGCTGCGGCCGGCCAGCCATGGAAACTGGA50.10264832683227264No Hit
ACCTGCGATCACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGG50.10264832683227264No Hit
CCCCTTTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAG50.10264832683227264No Hit
GTATCAACGCAGAGTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAAC50.10264832683227264No Hit
CGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT50.10264832683227264No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.10264832683227264No Hit
CAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCA50.10264832683227264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)