FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003666023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003666023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106
Sequences flagged as poor quality0
Sequence length140
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA43.7735849056603774Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCGACACCCTGGGGGTCGGCATCAACGTGCCCATCCGCACCGTGGTCATC43.7735849056603774No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC32.8301886792452833Clontech Universal Primer Mix Long (96% over 26bp)
TGTCCAGACAGGGGCCCAGGGACACGCACCCCGAATGGGCCCTCAGGAGA32.8301886792452833No Hit
GACCGGCGCGCCCGTCGCGTCGAAGACCGCGGCGGCCATGCCCCAGCTGC21.8867924528301887No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT21.8867924528301887Clontech Universal Primer Mix Long (100% over 23bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.8867924528301887Clontech Universal Primer Mix Long (96% over 26bp)
CCCGCGGCCTCGCCCTGGCCGGGAGGACGCCCGTCAGCGCCTGAGCCCGG21.8867924528301887No Hit
GTTCTCGGCCCACTCGTCCAGGTTGCCGTCCACGCCCCCGCGCTCCAGGG21.8867924528301887No Hit
TTGTAAAAGAGCTGGCATCAAACGATAAGGCCTACAGGTCGCTGACGCTG21.8867924528301887No Hit
GACGGTACGCGCCTGCGGAGCCATAACCGCCAAGGTCAAGGTCTCCGGCA21.8867924528301887No Hit
GTACAGGGCGGTGCGCCGGGCGCTGAGGGCGGAAGGGGCGCGGGTGAGTA21.8867924528301887No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAACACTGCG10.9433962264150944No Hit
GTAATGTATTAAGAGGAATTGCTCGTCCAAAGAGTGATCCATCAATAAGA10.9433962264150944No Hit
GTAGATCTCGGTGGTCGCCGTATCATTCCCATGTACTCTGCGTTGATACC10.9433962264150944Illumina Single End PCR Primer 1 (100% over 27bp)
GTAGTTCCGGGGTGTCCTGCAACAGGTCGAGCAACTGGCCAGCCAGCGGG10.9433962264150944No Hit
ATATAGGCTCGCTTTCCTGACGGGTCATGACCGAAAGGGGGCGCCCAAGC10.9433962264150944No Hit
GCGCCACCCGCGCCTCGACAGGCTGCGGGGGCTGCACGGACACGGTGCGC10.9433962264150944No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGACGCGACCC10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
CGCCAAGGCCGAGCGCCTGGCCGACCTGGGGATCGAGGTCGTCGCCATGG10.9433962264150944No Hit
CAAAGAGTGTGTTCTCACAGAATCACTGAAACATCAAATGTTCTCTGGAA10.9433962264150944No Hit
GAGACAATCCGCTCGTCACTGGCCCAGGCAATGAGGTCGACGGATTGGGC10.9433962264150944No Hit
GTCTGGAGGTGACCTGGACCAGCACCCCGACCCAGTGGGGCAACAGCTTC10.9433962264150944No Hit
GGGATGTCCAGCACAGCGACCCTGCTGCGGTGAGCGTCCCCGGACCGGTA10.9433962264150944No Hit
CGCCTGTGCCTCACGCCCTTTGACCTGACGCGCGGCCCGCTGCTGCGCGT10.9433962264150944No Hit
CGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATAAATAATA10.9433962264150944No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGAATCAACGCAGAGTACAAG10.9433962264150944Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCCCTGGAGACCTCCACGCCGGCCTTCGCCAGCTCCAGGTCCAGGGTCTT10.9433962264150944No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.9433962264150944Clontech SMART CDS Primer II A (96% over 26bp)
ACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGGTAC10.9433962264150944Illumina Single End PCR Primer 1 (100% over 43bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.9433962264150944Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
TCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
CTTGAAGCCCAGCCAGATGGGGAACAGGTGGCCCAGGAAGGCCGCGCCGC10.9433962264150944No Hit
GTATCAACGCAAAAAAAAAAAAAAATAAATAAATAAAAAAAAAAAATAAG10.9433962264150944No Hit
CGGATGATCGATTCCCGCGTATGCCTGTCATGTGGACGGTACAGAGACCG10.9433962264150944No Hit
GGTCAGCACCACCGCCCAGGTCAAGATCGACGACCCGGAGGATCCGTTCC10.9433962264150944No Hit
GTATCAACGCAGAGTACATGGTCGGGGGGCGCCGAGACAAAAACATTACC10.9433962264150944No Hit
CGCTTCAACGCCTACGCCCCGGCCTGGGAGACCGACCTGCAGGGCGGGCG10.9433962264150944No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACTGTCT10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
GTAATGTATTAAGAGGAATTTCTCGTCCAAAGAGTGATCCATCAATAAGA10.9433962264150944No Hit
TACAAAAATAAAATGAATGATTGCAAACATTACTGAAAACTGAACTTTTT10.9433962264150944No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAAAAATGC10.9433962264150944No Hit
CTCAACAACGAGACTGTCCCCCTCATCGACGAGGTCACCCGCACCGTCTC10.9433962264150944No Hit
CGCATCGATAGGCCCCAAAAGGGAGGCCGTTGCTAGTCCCGGGGGCAGCT10.9433962264150944No Hit
CTGCGCAGCTTTCCGAAGCCCGTCATCGCGGCGGTCGAGGGGGCGGCCGC10.9433962264150944No Hit
TTCCCAGCAACTCCAGTCCTTGCATCAGGAGATCGGAAGAGCGTCGTGTA10.9433962264150944Illumina Single End PCR Primer 1 (100% over 21bp)
CTGGCGCATCCCGTCGGAGACGGCGATGATCGCCGCGGCGGCCTCGTAGG10.9433962264150944No Hit
GAGTACATGGGAATGTACGGCGACACCGAGATCTACACTCTTTCCCTACA10.9433962264150944Illumina Single End PCR Primer 1 (96% over 28bp)
GTGTATCAACGCAGAGTACATGGGATTGGCGACCCAATCTACACTTCCCT10.9433962264150944No Hit
GAAGAGCGTCGTGTAGGGAAGAGTGAGATCTCGGGTCGTACATCCCATGT10.9433962264150944No Hit
TATCAACGCAGAGTACATGGGATATACCACCACGAGACTACACTCTTTCC10.9433962264150944No Hit
GGCGCATGATCTCGGCCACGGGATTGGCCTGCTTGAAGTCGATCACGTGA10.9433962264150944No Hit
CAATCGACGAGTGATCACGTCATACCCAGCAAGGGGTTGCTGATGAGCAC10.9433962264150944No Hit
CCCACGGGGATGAGCATGGCGCCGGTGATGCCGACGACGTCCTCGCGCTC10.9433962264150944No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTATACCACTTCTTCCCA10.9433962264150944No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
TCCCCTCGTTGTCGGCGAGGAAGTCCGCCCGCTGCTCCTCGGTGATCGGC10.9433962264150944No Hit
GTCCCACCTCACCCGGGAGTTCCGGTCGGTGCTGGGCGCCACTCCGCGCG10.9433962264150944No Hit
GTGTGGGAGAGGTTGGCGTCGCCGATGATGACGTGCAGGCGCCGGTGGCG10.9433962264150944No Hit
GACCTATCCTGCGAAGCCTCTTCGGAAGACGAACCCGCCCTATGCGGCCC10.9433962264150944No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCG10.9433962264150944No Hit
AAAGAGTGTAGATCTCGTTCCTCCCATGTACTCTGCGTTGATACCACTGC10.9433962264150944Clontech SMART CDS Primer II A (95% over 24bp)
CCCTCGATGCGGTCCCCGAACCGCCAGACTCCTCGGTTGTACTCCCAGAC10.9433962264150944No Hit
AATCAACCAACAGAACATGGGAACAATATCTAAAAAACAACACAAAAACC10.9433962264150944No Hit
ACTCTGCGTTGATACCACTGCTTTCATGTACTCTGCGTTGATACCACTGC10.9433962264150944Clontech Universal Primer Mix Long (96% over 25bp)
CGGCGCTGTAGTGCCAGCCTGTGCCCCAGTAGCCGTGGTTCGGCGAGAGC10.9433962264150944No Hit
ACCGGCCGCCAGCCCGAACGGGGACGGGAACCGCAGGCCCAGCGCCTCCA10.9433962264150944No Hit
TCCCTACACGACGCTCTTCCGATCTGTCCCAGGTCTTGTCGATACCAGAA10.9433962264150944Illumina Single End PCR Primer 1 (100% over 25bp)
ATTCGGACCTACCGTAAGCCTATATTTCGTTTTTCTGAGACCTATCCGAG10.9433962264150944No Hit
CATGTAGGTCGAATTGTCCAGATCATCGATGATCGGCAGGTTGCGGGTGC10.9433962264150944No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.9433962264150944Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGTCCGGACACCGCCCAGAACAGCAGTCCGCCGAGTTCCTGGGCGGTGGT10.9433962264150944No Hit
TCCCCGGCCGCCACCCGGATCCAGTGCGGAAAACGCCCGAAGCGGCGCAA10.9433962264150944No Hit
GTGTGCAGCAACGGCTTCAAACCGCCCAGAGCGAAAGCCCTGAGCGGTCG10.9433962264150944No Hit
GTATCACCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.9433962264150944Clontech Universal Primer Mix Long (96% over 26bp)
CCGGGCCCTCGCCGGCGTCCGCGGCCTGGACGGCGTCATGCTGGCCATGG10.9433962264150944No Hit
GTAAATGGGAAGCAGTGGTATCAACACAGAGTAAATGGGAAGCAGTCGTA10.9433962264150944Clontech SMARTer II A Oligonucleotide (95% over 24bp)
TCCCATGGTCGTCGACGAAAGAACCCGGCTCACCGGTGAGGGTGGGCCGG10.9433962264150944No Hit
GTATCAACGCAGAGTACATGGGAAGCAAGTGGTATCAACGCAGAGTACAT10.9433962264150944Clontech SMARTer II A Oligonucleotide (95% over 22bp)
GAGTACATGGGTACGACCGAGTCTACACCATCCCTACACGGAGCTGCCGA10.9433962264150944No Hit
GCGCATGAAGGACGTGGTCCGCAAGTCCCAGGCGGGCGAGACCGGGCGGG10.9433962264150944No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.9433962264150944Clontech Universal Primer Mix Long (96% over 25bp)
GACGGAGGAGATCGTCGCCGTGGCCGCGCTCATCGCCGACGAGGGGACGG10.9433962264150944No Hit
CGCCGTAGCGCTCGAGCAGCAGACCGGCCGTCGCCGTCGCCCGCAGCGTC10.9433962264150944No Hit
GGTGTAGGGAAAGAGTGTCGATCTCGGTGCGACCCATGTACTCTGCGTTG10.9433962264150944No Hit
GATGCGGGCTGTCGTGAAGCTGACTGGGCCAAAGAAACTCGACACCGATC10.9433962264150944No Hit
GCCACCCCGAAGATCATGTACCCGATGTGGCTGATCAGGGTGAAGGACAG10.9433962264150944No Hit

[FAIL]Adapter Content

Adapter graph