FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003666053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003666053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATATACTTGTGAAGTCTGAAGTTTTAGTGCAGCCATCACCTGAGTAGT38.571428571428571No Hit
GAATGTGGCCATTGTTGAGCCCAGTGAGAGACATTTCTACCAGCCAATCT25.714285714285714No Hit
CTCGATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGA25.714285714285714No Hit
GACCCAATCGACGCTGGAATTCTTCCTGTCGGGTTCGATGGCCAAGGTGA25.714285714285714No Hit
TGGCAGGAGTTCCCGGGCCCCTGGGCACCACCTCTGCCCACTCCCATCCT12.857142857142857No Hit
GGAAGGCCGGGTCCCCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCTCT12.857142857142857No Hit
CCTCGTGAGCGTCGTAGATTACTTTGCAGTGATGGCGCCAACGCCACACC12.857142857142857No Hit
GTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAA12.857142857142857No Hit
CTGCTGATCGCCTACAAGCCAGCCCCTGGCACCTGCTGCTACATCATGAA12.857142857142857No Hit
GTGCGCGGCAAGGGGCTCTTCACCGCCATCGAGATCGTGGCCGACAAGGC12.857142857142857No Hit
CAGCATGCCGTCTGTTTAACAGTAAGTCCTTCATCCACACTTCCTGTTGC12.857142857142857No Hit
ACTCTAGTCTGGCACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGA12.857142857142857No Hit
TTCCTACACCCAGCTCTCTTTTTCTAATGTAAATGTTGTGTACAATAGTT12.857142857142857No Hit
TTTCTCATGCCTCAGCCTCTCAAGTCGCTGGGACTACAGATGTGGGCCAC12.857142857142857No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG12.857142857142857No Hit
GTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCATGGTGTTAACCA12.857142857142857No Hit
GCAGGTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCAT12.857142857142857No Hit
GCGGCTACCATATCCAAAACTATTTCACTGCCGTTTCTACTGGAAATCTC12.857142857142857No Hit
GGCAAAAGAGCTTGCCCCTTCTTTGATAAGGAAACAGTAACGACAGGAAT12.857142857142857No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA12.857142857142857No Hit
ATCAAGGAGAGCGAAGTCAAGGCCCTGTGCGCTAAGGCCAGAGAGATCTT12.857142857142857No Hit
GGGTGACCTAGAGCCGCCTTCAGATGTGACCCGAGTAACTTTCAACTGAT12.857142857142857No Hit
GCCCGATGCGCCAGAGTTGTTTCTGAAACATGGCAAAGGTAGCGTTGCCA12.857142857142857No Hit
GTGCCGGCCTATGCCATCGGCCTCGCGGCCGAGCAGATGGCCTCGCGCAT12.857142857142857No Hit
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA12.857142857142857No Hit
AGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCC12.857142857142857No Hit
GCCCTTTTCTACTTTTTAATCACTCCCTACTACTACTACTTCTCTTTTCT12.857142857142857No Hit
CCGCGAGTAGCGCCTGTACTTCCGCTGGTGGCGCCTTCGGGAACGGGACC12.857142857142857No Hit
GCTTTAGGAAACTGTGGAGTGGCTTTTTGAGTTCTGTGGCTCCAGGAGCT12.857142857142857No Hit
GGGCTTGCGATGGCATTGTCGATTTACCAAATGGTGGCCCCGAACGACCT12.857142857142857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)