FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003666232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003666232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCCTGCCCTGCCTCATGGAATAAGAAAGGCAACGTTTTGCAGCTTCCA43.8461538461538463No Hit
AATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCTT21.9230769230769231No Hit
CAATGCACCTTTCTGCAAAATTGTCTGAAAAACCTTTTAAAACAGGTATC21.9230769230769231No Hit
GGCCAGGGAGGCCCGGCACAGTGGCTCACGCATGTAATCCCAGCACTTTG21.9230769230769231No Hit
GAGCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCAGAGGCTGG21.9230769230769231No Hit
GTACATGGGGACTTCGGGCTTGTTCGCTGGTGGCGTCGGAGCCGAGCCGG21.9230769230769231No Hit
TTTCATAACATTTCTTGTTGATCAAACCACCGTGGACACCTTCTTTGCCC21.9230769230769231No Hit
TACAAAGACTTAGTATGTTGGAATTGCTGGCTAATTGTGCTTTAAGATTG21.9230769230769231No Hit
CCCTCCTCCACCATGAAACTCGCTGTCACCCTCACCCTGGTCACACTGGC21.9230769230769231No Hit
CCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCC21.9230769230769231No Hit
GACTCACAGGCCGTGGTGCGGAGGACTCGCTGGCCGATCAGGCTGCCAAT21.9230769230769231No Hit
GGACTAACAGTTAAATTTACAAGGGGATTTAGAGGGTTCTGTGGGCAAAT21.9230769230769231No Hit
CTAGTGAGATGAACCCTGTATCTCAGTTGGAAATGCAGAAATCACCCGTC10.9615384615384616No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA10.9615384615384616No Hit
GTCTCTGAGTCTCTGTGGCATGGTTTGGGAACACAGGAAGGGTACCGATT10.9615384615384616No Hit
AAATGAAGGACATTGAAAAAATGTACAAAAGTGGATACAATACAATGGAA10.9615384615384616No Hit
TTCTTGAGGCGCTCGCGGTCGGCCCCCGCCTTGAACGCGTCGTCGAACGC10.9615384615384616No Hit
AATCTGGACGTTCCTTCTTCAGCTTGCTGTAATCCACATTCACTGAGTAG10.9615384615384616No Hit
GACTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGC10.9615384615384616No Hit
TTTCTTAACCTTGTCTACAAATCTCTGAAAGCTGACATTGTGTTGCGCCG10.9615384615384616No Hit
CTCTTCTGCTATCTCTTCAGTCTTATCAGATTTTGGCTTCTCTTTTTTCT10.9615384615384616No Hit
TCTTTATACATGTTTTTTTTTGTTTTCAATGTACTTTCATATCAATTTTC10.9615384615384616No Hit
AGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGA10.9615384615384616No Hit
TATCAACGCAGAGTACATGGGACCCTGGTCACACTGGCTCTCTGCTGCAG10.9615384615384616No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGG10.9615384615384616No Hit
AATTTTTCCATGAGCTTAATGAAGCTTTCTCTGGGCTTTTGGTGGAGGGT10.9615384615384616No Hit
TCTCTGGGCTTTTGGGGGAGGGTGTCCACCAGCTTCTTCAGCTGAGCCCC10.9615384615384616No Hit
GTGACTGGCAGTGTCCAGGGAAGAAGAGATGTTGTCCTGACACTTGTGGC10.9615384615384616No Hit
ATATTACAATCCTTGACCTCAGTGAAAGCAGTCATCTTCAGCGTTTTCCA10.9615384615384616No Hit
CCATGAAACTCGCTGTCACCCTCACCCTGGTCACACTGGCTCTCTGCTGC10.9615384615384616No Hit
GCCCTGATCAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTG10.9615384615384616No Hit
GGCTTTTGTTTTGATTTTTTAACCTTTCTACTTCCCATTGTTTCTTCAGA10.9615384615384616No Hit
GTCCTCTGCTCTCGTTTTTCTTCCAGCATCAGCCAGCATCTCTAGGTGGG10.9615384615384616No Hit
TCTATGAGCTGAAAGAAGACAAGAGCTACAATGTCACCTCCGTCCTGTTT10.9615384615384616No Hit
TTTCAGATGCTTGTGGTTTATTGAAGAGAGCAAGGCTGGTGGGCGTGGAC10.9615384615384616No Hit
CTGGTTTTTCTAATTCTGTGAAAAATGATATTGATATTTTGATAGGAATT10.9615384615384616No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATC10.9615384615384616No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAT10.9615384615384616No Hit
ATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT10.9615384615384616No Hit
GCTTCATGGCGCGGGGGCTCGGGGCCGGGGGGGGCCCCAGCGGGCGCCGC10.9615384615384616No Hit
GCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAGTT10.9615384615384616No Hit
GAATGCCGGCAAGGGAGAGTACAAGATCATGGTTGCTGCCCTGGGCTGGG10.9615384615384616No Hit
GTGTAATTAGCATTTAGAAGCTGAAGATCCCCAACTGCTCCAGCCTCTGC10.9615384615384616No Hit
GGCTGGAGCAGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGA10.9615384615384616No Hit
GTGGTCCAGTTTCTCAGGCTGCAGGGCCACTCTTGTCATGAACCCAAAGG10.9615384615384616No Hit
GGGTTTCGATGACACGCTGAAAGCTCGGGCAGATCTCTGCAGAAGCGGAG10.9615384615384616No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTTAA10.9615384615384616No Hit
ATTGAAGAGAGCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCA10.9615384615384616No Hit
AAAAGGGCAGAAGGGTCATTTGTTTTTGTGTCTGAAGCACCCCAACTTGA10.9615384615384616No Hit
CAGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGG10.9615384615384616No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.9615384615384616Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACT10.9615384615384616No Hit
GGCCAGCGCAAGCGCCTCGCGCTCGTGCACGCCTGGCTGGAAGACCGTCC10.9615384615384616No Hit
CACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCC10.9615384615384616No Hit
GTTGCTGTAAAATAAAAACCATTTCCTGATAGACAAAACCAAAATTACCT10.9615384615384616No Hit
TCTCTGGAGATGTGCACATTCCTGCAGGAGCACGTTCCACCTCTGCTTCT10.9615384615384616No Hit
CCTCCAAGGACGCAGACTGCAACACCGACGCCGTTGGAGTCATAAGACGG10.9615384615384616No Hit
GTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCTTTCTCTGGGC10.9615384615384616No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTTAAAA10.9615384615384616No Hit
AGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAG10.9615384615384616No Hit
ACCAGAGACAGGCCAGAGCATCCCCCTCCTCCACCATGAAACTCGCTGTC10.9615384615384616No Hit
CTTTGATGTGTAGGAGAAAGTCTGTTTCCAAGCCTCCCATCTCTCGGCCA10.9615384615384616No Hit
AGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTG10.9615384615384616No Hit
GTACAGGGTTTCTTTCTGGAGTGATAAAAATGTACCAAAACTAACTGGTG10.9615384615384616No Hit
GACTCGGAGATGTGTATAAGAGACAGGAGATCTGCCCGAGCTTTCAGCGT10.9615384615384616No Hit
GACCAGCCTGGGCAACATAGGGAGACCCTATCTCTACAAAAAATAAAAAA10.9615384615384616No Hit
TCGGGGACGACATCCCCAGCGCTCTTCGAATCGCGAAGAAGAAGCGCTGG10.9615384615384616No Hit
CACTGGCTCTCTGCTGCAGCTCCGCTTCTGCAGAGATCTGCCCGAGCTTT10.9615384615384616No Hit
GTATCAACGCAGAGTACATGGGATGATCGGCGACCACCGAGATCTGTCTC10.9615384615384616No Hit
CTTTCTTAATTGGTGGCTGCTTTTAGGCCTACTATGGGTGTTAAATTTTT10.9615384615384616No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTTATACC10.9615384615384616No Hit
CTCCCCCAAAAGCCCAGAGAAAGCATCATTAAGCTCATGGAAAAAATAGC10.9615384615384616No Hit
GTGAAGCCCAATGCAAACAGAATTGCTTTAGATTTCCAAAGAGGGAATGA10.9615384615384616No Hit
GTATCAACGCAGAGTACATGGGACTAGCCCACCAGACTCAGAGACGGAAC10.9615384615384616No Hit
ATCCTGAGTTCTAGTTTGATTGCACTGTGGTATGAGATATAGTTTGTTAT10.9615384615384616No Hit
CATGTCTTGATCAGGGCTGAAAAGTTCCATGGCAGCCTCATAACTGGAGG10.9615384615384616No Hit
GCTTCTCTCTTCTTCACTGACGTCGGCATTATTTGAAGAATCTTCTTCAT10.9615384615384616No Hit
CCATGGATTTGTTTACTGTAATAGAAACATTTCACAGGAGAGAGACATAG10.9615384615384616No Hit
GCTAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATG10.9615384615384616No Hit
GGGTCTGTGGGCTAATCTGCCGTTGGCGATTGGTTGCGCCATCTCCCTGA10.9615384615384616No Hit
CTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGA10.9615384615384616No Hit
GTCAAGGACGACGCGTTGCCCGCGTGGGTGAGCGTGGATCTCGGTGCTCA10.9615384615384616No Hit
GCTACAATGTCACCTCCGTCCTGTTTAGGAAAAAGAAGTGTGACTACTGG10.9615384615384616No Hit
CTGGTAACCCAGCAGCACCGTAGCCTCTGCCCTGTAAAAATCAGACTCGG10.9615384615384616No Hit
GAGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACC10.9615384615384616No Hit
GTACATGGGATACTAGCCCACCAGACTCAGAGACGGAACCAGAGACAGGC10.9615384615384616No Hit
GTCCTGTGTCACTCCCAATTTCTGAGCTCCAGCCACCACCAGGCTGAGCA10.9615384615384616No Hit
CTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGAT10.9615384615384616No Hit
GTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGAG10.9615384615384616No Hit
ACTGGAGGGTGTGTCCATGAGGAGGGTTTCGATGACACGCTGAAAGCTCG10.9615384615384616No Hit

[WARN]Adapter Content

Adapter graph