FastQCFastQC Report
Tue 10 May 2022
EGAF00003666926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003666926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23924
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1560.6520648720949673No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1260.5266677813074737No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT490.2048152482862398No Hit
GTTCTAATGCTGCGAAAATCCTGGTTTTATTTACGCAGAAAAAAGAAGGC420.1755559271024912No Hit
GTATACGACGGTCGGCAACGCGGCGAGTGGCACGGGCAATGTGGCTGCTG410.17137602407624142No Hit
CCTTAATATATTCGCTGGTTTAACTGACGAAGCTCAACATGCTGAAATCA370.15465641197124227No Hit
GTACATGGGAATGCCGCAAAAGATTCTCGAAAAATCGGCGGCAAATTTAG330.1379367998662431No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT300.12539709078749373No Hit
GTATACGACCGCTTTCCGCGTCTGGCCGAACGCCGCTCGCAGCGCGCCGA300.12539709078749373No Hit
ATCCACCACAATGCAGCCGATGCGGTGCTCAAGCGCCATCCGCAGTTCTT300.12539709078749373No Hit
GTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTTAGAAATCG300.12539709078749373No Hit
ATGTAAAGAAACGGGTCACTCCATCGATGTTCTTCTTCGGATCACGCCCG290.12121718776124395No Hit
GTATTAGTACGGAAGCTCTCGGAAAAACCATCCCGGGGGCCACGGATCAC290.12121718776124395No Hit
CCTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTT290.12121718776124395No Hit
GTGGTAAGTGAGGGCATTTGCCCAGAATTTCTCAAAAAATTACCTCAGTT290.12121718776124395No Hit
GTCCCGGACCGCGTCGCGCAATCGGCGGCTGGCGGCTCCTGCTGCCGCTT280.11703728473499415No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT280.11703728473499415No Hit
CTTCTACTCCGGGCGTGATCCGAAGAAGAACATCGATGGAGTGACCCGTT270.11285738170874436No Hit
ACCTGGGACTTGATCCGAACAACATCCTCAAGCGGCTGGGTGACGGCTTC270.11285738170874436No Hit
ACATTACAACGGGCCAGGAAGATTCAAAGTTTGGTTTCGATCTTCATAAC270.11285738170874436No Hit
TCTTTACATAGGTCTTCAAGAAGCGCGATCATAGAAATTATCCACCACAA260.10867747868249457No Hit
CCTGTAGCCTGTCAGCTGGGCAACCTGTTCACGGATGAGCTTTTGCTCGT260.10867747868249457No Hit
GAGTAGAAGCGCATACGCATGACTACATTACAACGGGCCAGGAAGATTCA250.10449757565624478No Hit
ATTTAAACCCGTTATTGACAGAACCCTAAAAGTTGCCGGGTTCTGTTAAT250.10449757565624478No Hit
TATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTTTAAGCAGGCG250.10449757565624478No Hit
ATTATTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTT240.10031767262999498No Hit
ATTCAGCACCTTGGATACAAATGAATATGAATCTCTCCATTCGTCTAGTT240.10031767262999498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)