FastQCFastQC Report
Tue 10 May 2022
EGAF00003667180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003667180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences762680
Sequences flagged as poor quality0
Sequence length146
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATACCAGCGTTATGAGATCAAGATGACCAAGATGTATAAAGGGTTC9610.1260030419048618No Hit
GCCCTGGCTCCCGAGGCAGGCAGGCAAGGTGACGGGACTGGAAGCCCTTT8620.11302249960665023No Hit
GTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCT8550.11210468348455446No Hit
GTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCTATCTGGGACCG8440.11066240100697541No Hit
GGGTGGACACTGTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCT8250.10817118581842974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)