FastQCFastQC Report
Wed 8 May 2024
EGAF00003667974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003667974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202631
Total Bases29.5 Mbp
Sequences flagged as poor quality0
Sequence length146
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCTAGACTGATACCTCCTCATGAAATTTCTGCAGACGTCGCGCCATCG4370.2156629538422058No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG2470.12189645217168153No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG2330.1149873415222745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)