FastQCFastQC Report
Tue 10 May 2022
EGAF00003667975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003667975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205249
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCTAGACTGATACCTCCTCATGAAATTTCTGCAGACGTCGCGCCATCG3220.15688261574965043No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG2550.12423933855950577No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG2240.109135732695409No Hit
GGTATACACAACCTGAGGTCCTCACAGATCTGCTGGGCAGTTTCTCCGGC2160.10523802795628723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)