FastQCFastQC Report
Tue 10 May 2022
EGAF00003667981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003667981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15124
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGATGCGACTGTTCCCCGGGGTCAGGGCCGCTGGTATTTGCTG320.21158423697434542No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC310.2049722295688971No Hit
ATTTAAGAATATTTGTACAAGAACAAAAGTTTGGAAAGAAACTGACATTC220.14546416291986247No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT210.13885215551441418No Hit
GTATCAACGCAGAGTACATGGGATGCGACTGTTCCCCGGGGTCAGGGCCG200.13224014810896587No Hit
GTACATGGGCAGGACCATCAATGAGGTAGAGAACCAGATCCTGACCCGGG180.11901613329806929No Hit
GTACATGGGAGGCTGGAGGAAGGGGAAAAGGCCCTGGGAGGATGAGTGGC170.112404125892621No Hit
GTATATGATGTTGCTCTGCAAGAACCTTTAGGCTAGGCCTTATTAACCTC160.10579211848717271No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT160.10579211848717271No Hit
GCTGTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTTCAGC160.10579211848717271No Hit
CTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAAGA160.10579211848717271No Hit
GTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTTCAGCCTT160.10579211848717271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)