FastQCFastQC Report
Tue 10 May 2022
EGAF00003668069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8672
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA2653.055811808118081No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1892.1794280442804426No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA180.20756457564575648No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG170.1960332103321033No Hit
GTACATGGGAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCTAAAC150.17297047970479704No Hit
GTACATGGGATGTGGAGAAGAGCCAATTTAACAAACTAGGAAGATGAAAA140.16143911439114392No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC130.14990774907749077No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG130.14990774907749077No Hit
ATATAATTCTGTACATTGGGGCAATCTCAAAAGTAGTAAAATTTTTTTTG130.14990774907749077No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA130.14990774907749077No Hit
CATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTAT130.14990774907749077No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC130.14990774907749077No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA120.13837638376383762No Hit
AAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAG120.13837638376383762No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT120.13837638376383762No Hit
GTACACAGAGGCACCGTCATCCATACCACCATTGTCATCAGCATCGCCCA120.13837638376383762No Hit
GAATTATATAATTCTAACGCTTAAATCATGTGAAAGGGTTGCTGCTGTCA120.13837638376383762No Hit
ATTCTGTACATTGGGGCAATCTCAAAAGTAGTAAAATTTTTTTTGTCTTT120.13837638376383762No Hit
GCTTATCCACTTCTTTTTGAGAGCCAACCGTATAAAGAGTTGTGCCTGCG120.13837638376383762No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA110.1268450184501845No Hit
GTACATGGGACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAG110.1268450184501845No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA110.1268450184501845No Hit
TTTATGAACTAGCCTATCGCAGACGGTATCAACAGGAACATCCTCGTGTT110.1268450184501845No Hit
AGGCTACTACGTGCGCGATATGACAAGTTAACAAGACGGCGCAGGTTGAT110.1268450184501845No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG110.1268450184501845No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT110.1268450184501845No Hit
ATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTT100.11531365313653136No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT100.11531365313653136No Hit
ATATAATTCTAACGCTTAAATCATGTGAAAGGGTTGCTGCTGTCAGCCTT100.11531365313653136No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA90.10378228782287824No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG90.10378228782287824No Hit
TCTTTATTCCTCTCCTGCCTCAGAGGTCAGGAAGGAGGTCTGGCAGGACC90.10378228782287824No Hit
GTAGTAACTGCCCCACCAAAGGTCTTAAAAGCCATTTTTGGAGCCTATTG90.10378228782287824No Hit
GTACATGGGTATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAACTTC90.10378228782287824No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT90.10378228782287824No Hit
CATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATA90.10378228782287824No Hit
GTACATGGGATAGCCTGCCTTCAATTTTGATCCTTTATTCTTTCTATTTG90.10378228782287824No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC90.10378228782287824No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT90.10378228782287824No Hit
TATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGG90.10378228782287824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)