FastQCFastQC Report
Tue 10 May 2022
EGAF00003668071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8807
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA2552.895424094470308No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1962.225502441239923No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG210.2384466901328489No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC190.215737481548768No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA190.215737481548768No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT180.2043828772567276No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT170.19302827296468716No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG160.18167366867264675No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA160.18167366867264675No Hit
GTACATGGGAGCCCGGGTCGATTATAACAACGGTGCAATCTCAGCTAAAC160.18167366867264675No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC150.17031906438060634No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG150.17031906438060634No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC150.17031906438060634No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT150.17031906438060634No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA140.15896446008856593No Hit
GTACATGGGATGTGGAGAAGAGCCAATTTAACAAACTAGGAAGATGAAAA140.15896446008856593No Hit
GTATCAACGCAGAGTACATGGGATGTGGAGAAGAGCCAATTTAACAAACT130.1476098557965255No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC110.12490064721244465No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA110.12490064721244465No Hit
GTACAGAATTATATAATTCTAACGCTTAAATCATGTGAAAGGGTTGCTGC110.12490064721244465No Hit
TAACAAGACGGCGCAGGTTGATGCTTCCAATAAACATGATCTTTCTGCTC110.12490064721244465No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT110.12490064721244465No Hit
GTACATGGGATAGCCTGCCTTCAATTTTGATCCTTTATTCTTTCTATTTG110.12490064721244465No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG110.12490064721244465No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT100.11354604292040424No Hit
ATACAAAAACATGAAACCAACCATCTTCAGCCCACACTTTCTGGCTGTAA100.11354604292040424No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA100.11354604292040424No Hit
GAATTATATAATTCTAACGCTTAAATCATGTGAAAGGGTTGCTGCTGTCA100.11354604292040424No Hit
CATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATA100.11354604292040424No Hit
GTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCG100.11354604292040424No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC100.11354604292040424No Hit
ATTATTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTT100.11354604292040424No Hit
ATCTTAAGTTGATCCTCCTACTCCGTGGAGAAACAGGCTGAGAGGGGGGA100.11354604292040424No Hit
GTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGC90.1021914386283638No Hit
GTACATGGGATGCCTCCTCCGGACACAAGTACTCCCTGAAAGAGGCCCTT90.1021914386283638No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA90.1021914386283638No Hit
GTATCAACGCAGAGTACATGGGAGAACTGCGGATGGCGCTTGAGCACCGC90.1021914386283638No Hit
GATTATAACAACGGTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCCTT90.1021914386283638No Hit
AAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAG90.1021914386283638No Hit
TGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGATCCCGG90.1021914386283638No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA90.1021914386283638No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC90.1021914386283638No Hit
GTACATGGGTATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAACTTC90.1021914386283638No Hit
ATTAAATGCAGAATTAAATCCACTTCTTTTACTTCCTCAAGCGTTGAGCG90.1021914386283638No Hit
TATCAACGCAGAGTACATGGGATGTGGAGAAGAGCCAATTTAACAAACTA90.1021914386283638No Hit
GGGATAGCCTGCCTTCAATTTTGATCCTTTATTCTTTCTATTTGTCAGGT90.1021914386283638No Hit
GTGCAATAGGCTCCAAAAATGGCTTTTAAGACCTTTGGTGGGGCAGTTAC90.1021914386283638No Hit
CTTAAAATCAGTGTTTCCCCTTTGTGCACTTGTAGAAAAAAAAGAAAAAC90.1021914386283638No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT90.1021914386283638No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA90.1021914386283638No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.1021914386283638No Hit
TATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGG90.1021914386283638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)