FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003668367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length146
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACATGTCGGTCGTCATGCTGCCGCCGTCAGTCTTGCGGTAGTTCCAT715.909090909090908No Hit
GCTTAGGTATTCTGAATTCCATCCCAGTTGGTTTAAGTGAGTATAAAGAG24.545454545454546No Hit
CGGCGCGGTGTCCAGTGACCACAGCCACCGCGACTTAGGCACCATCATCC24.545454545454546No Hit
ATGTATATCAGTTTAAGGATGTAAAAGAGGTGCTGGCTAAAGCCAACGAA24.545454545454546No Hit
GACCGGGCGGGGAACCTACGGTGACGTGGTGACGAACGTCAGTCCAGCCG24.545454545454546No Hit
CACCGGTGACGTCACCATCAACTCCGAGGCACCAGTCATCGTCATGACGA24.545454545454546No Hit
GTCTTGCCGCGGCGCTGGTGGGAGCATTGTTTATGGCTGCCTGTCTCGTT24.545454545454546No Hit
CGTAGGCGTAGGGCAGGTCCGCGTTGCAGACCACGAGGTCCGCCGTCACC24.545454545454546No Hit
TGGCGCTTTCAACGCCATCCCACCGGACTACGTCCCCAACTCCGTTCTCG24.545454545454546No Hit
GCACGGATGGTGCGCCGGCGGCAGTCTGACCAGCGCGTCAACCATGGATC24.545454545454546No Hit
GTGGTCGCGCGACTTCGCCGCCGAGGGCTTCGAGCCGCGCGACCACCTCG12.272727272727273No Hit
ACCCAGCGGGTTCGCCGCCGCGAGCGCGGTGCGCAGGCGCTCGGGCAGGG12.272727272727273No Hit
GCGGTGAGATGCCTGGCTTCCAGACCACCTGGTTCTGCGGCTCATTCACC12.272727272727273No Hit
GGCACGCGCAGCGTCCGGATCGGTGCCAATGAAGCGTTCCACCAACTGGG12.272727272727273No Hit
CACNGGTGACGTCACCATCAACTCCGAGGCACCAGTCATCGTCATGACGA12.272727272727273No Hit
GGTCTCTTGGCAGGGGTGGGGCTCTCAGACACACATCTAATTTCCTCTCT12.272727272727273No Hit
CGGCCCAACAGGCCAATTTCCAGCTCGTCGCGCTGCTCCTGGCGATAGTG12.272727272727273No Hit
ATGTAGTTGGTTGCCAGCTGATCGAGGCCTTCGTCGGTATTGCTGTTGGC12.272727272727273No Hit
GAAAAAGAACCGAGTCGGGTATGACGCACACCCATGACGGTCTCATCATT12.272727272727273No Hit
GCGCGGCCCTGGGGCTCGTCGGTCGGGGACTCCTCGCCCTCGGCGTTGAA12.272727272727273No Hit
GGCTTCGGGCTAGCTACCTCGTCGTCAGATTTAGGCTCTGATAGTTTCGT12.272727272727273No Hit
CAAAAAAGCAATAAAAGTTGTGCCAGACTTTTGCTTCCATTAGGATACAG12.272727272727273No Hit
GTACATGCCTTACTGAGAAGTGTCCATGGACTGTCTCTTATACACATCTC12.272727272727273No Hit
ATCATGCCGCTCACCCGACTGAACCCAGCCATCTCAGTAACGGCGTGTTT12.272727272727273No Hit
GTGCGTCACCACCGACGAGCACATCTCCCACCTTGATCTGGTGCGTCTTA12.272727272727273No Hit
ACATGCTACCAGAGAAAAATTACTTAGTCACAAAAGGAAGACAGGAAGAA12.272727272727273No Hit
CACTCCTACTGTGGCCTGAATGTTTGTTCCTCACATAGGATTCCAGAACA12.272727272727273No Hit
CGAGGAACGCCACAAGTTCCTGGTCACCCAACTCGAGGACGTCAAGAATT12.272727272727273No Hit
CCATCACCCGGTGTGGTGCGGGCACCGTCGTCGGGGTGGATCTGCCAGGC12.272727272727273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)