FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003668368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length146
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCACAACATCATTGACGGCGTCGTCCACGACAAGCTTTACCTGCCTG715.909090909090908No Hit
CCCCAAGGTGTCGAGAGTATGGGAATTGCGGTAGATCATATTGCGCAATA36.8181818181818175No Hit
CATGGGAAGGTGGCCGGCAGTTGGCAGAAAGGGGAGAATGGCGGAGGCAG24.545454545454546No Hit
GCCTACCAGGATCCACCAAAACTGGCCGTCAGAGGGCGGCCTCATCTGAG24.545454545454546No Hit
GGCCTGACGCCCGCGCTCCCGGTCTGTTCATGATCGAAAACGAATCGAGA24.545454545454546No Hit
GGCAATCACCGGATTATTGCGGATGTCCGCTACGGTCATTTCCGACAACA24.545454545454546No Hit
AGTAGTGACCACCATCCGAGAACGAATCCGGCGTGACATTCACGATGCCC24.545454545454546No Hit
GACGGTCATCGTCAAGCCGTCCTCGCTGGCCATCCTCGCCTGATCGGTGA24.545454545454546No Hit
GTTCCCGATGGGCGGGCTCTACGCCATCCCGCTCGCGCTCGAGCGCGTGG24.545454545454546No Hit
ATGTAACTGCAGTCTTGAGCTGTCTCTTTTCATGTATTACCTTTCTTGCT24.545454545454546No Hit
GACTTTGGCAGACCAGCATGTCTGTGCCTCAGACAGGACCTTTTCTGCTC12.272727272727273No Hit
CGTTCAGGTGGGCTGCCTGTCCCATGCACCCAACCCCCAGGGCCGAAGCC12.272727272727273No Hit
GTTTGGCTATCTCGGTTGCTGTAGTGACGGTGGTGGGGGTCCTGGAGCGG12.272727272727273No Hit
CCTTCAACGATGTGCCGTTCCCGCTCGAGGGCTGAAGAAACTCGTCAAAG12.272727272727273No Hit
AGCATGTCGTCCGGGTCGGTCAGGAGCAGCCGCCCCTCTCCTCCCGGGAA12.272727272727273No Hit
CCTCTGAAGCCAACAGCAATACCGACGAAGGCCTCGATCAGCTGGCAACC12.272727272727273No Hit
GCTACGACCACATCACCGAGCTCGAGCACGTGGAGGAGTCGCTCAAGCAG12.272727272727273No Hit
TCGGTGTCCGGCACCGAGTTGGAGGTGACCCACATCGAGATTAATGATGA12.272727272727273No Hit
GCTGCATCAGGGCGAGCTCGAGACGCGCGCCCACGCCCGTGAGGAAGCTG12.272727272727273No Hit
CTGCTGTTTTGCTGTTTCTTCTGCGTTTCCTAACAGCCCTGCTGGGGAGG12.272727272727273No Hit
ATGTTGGCCACCGCCCACGCCTCCGGGGACCGATTCTGTGAGTTGCGTGA12.272727272727273No Hit
ATTAGAGAACTGAGTCCATTTACATTCAGTGCTATCATTGATAAGTAAGG12.272727272727273No Hit
TCCATGGACACTTCTCAGTAAGGCATGTACCTGTCTCTTATACACATCTG12.272727272727273No Hit
AACCACGCCATACCGACGAATGGGAAGGTCACGATCATGAGGTTCGTTTT12.272727272727273No Hit
CACGAGCAGACCCACCGCGTGCAGTTCGCGGCCGCGCCCTGGCTGCGCGA12.272727272727273No Hit
GCATGATCGCCGTCGCCGTCGCTGGCCGAGTTGTCGGGGACACTTCGATC12.272727272727273No Hit
ATGACCGTCCATCCAGCAGTGCACCGCAATCACGACACCGCCGCGTTCCA12.272727272727273No Hit
CCTGAATGCTATCTGAGGGACAAACATCCTAACCACAGCAGGAGTGTTAT12.272727272727273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)