FastQCFastQC Report
Tue 10 May 2022
EGAF00003668635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences885318
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG9840.11114650329034313No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA9810.11080764199982379No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC9200.10391746242593056No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG8860.10007703446671139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)