FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003668714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length146
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAACATCGGCTTTGCCGGGCTGACGATGGGCAAAGATCTGGGCCTCA34.3478260869565215No Hit
GTAATAGCGAATTGACCTAGACCACCGCCACCCAAAGCGCCGGCGATGGC34.3478260869565215No Hit
CGGCACGGTTGAGCAGGTCAACGGTGTGGTCAACGTAAGGAAGAAGTAAT22.898550724637681No Hit
TATCCCGGAGGGGCACCGACCAGGCGGGCGACGGAGTGCTTCTCGCCGTA22.898550724637681No Hit
TACCCAGCCCATGGCCTCGGAAAGCTGGCCCTGGGAACTCACTTGAGTGC22.898550724637681No Hit
GCCTGCGGGTGTCCCGGGCCCGGCGCCGCCTGCAGAAGCTCGTGCGCGAG22.898550724637681No Hit
ATTGTTGGCACCGGCGCGCCGCGGTGCCATAGAGCGTGGGGACTATGCCG22.898550724637681No Hit
AGCCAGGTGGGTCTGGGCTTCAGGATTTTGAGGAAACAGTGGTGGCCCCA22.898550724637681No Hit
CCTCCCGCAGCCCTACGACGCGTTCAGAGCCCTGCCAACCCGCGGTGTAC22.898550724637681No Hit
AAGCAACCCGGATCCACCAAGATTAGGTTCAATCATGCAGATGCGGCAGA22.898550724637681No Hit
TAATAATGGTCAATGTGTGATAAACAATCAATGAATGAATGAATGAACAA22.898550724637681No Hit
GTGTGAACTACGGCGGCCGCGCGGAGATCACCGACGCCGTCCGGCAGATC11.4492753623188406No Hit
GCTGTATGGCCGGGCACAGGAGATTTTCTACCAGCAGGCACCGTGGATTG11.4492753623188406No Hit
CACACAGCCTGCACATAATAAACTACTGCTCTATTCTTTGATTCTTACCT11.4492753623188406No Hit
TACAGGCGCAGCTCATGATCCAAAGTGCTCGGCCCGAAGGTGGTGAAGAA11.4492753623188406No Hit
CGTCGATGCTCTACCTCAACCTGACTCTGGCCTCGCTGACCTTGGTGTGC11.4492753623188406No Hit
GGTGTATGCCTATAGTCCCAAATAATTGGTAGACCGAAGTGGGGAGGATC11.4492753623188406No Hit
CGTGCTACAATGGTGGTGACAGAGGGTTCATCCCTAAAAGCCATCTCAGT11.4492753623188406No Hit
TAGCCATTCTGTCCGGTGTAGAGGATCGGGATCTTGTCGTGGAGCCGGTG11.4492753623188406No Hit
GTGGAAACAGTGGGATGGTCCCTATTTTGGGCCCGACGACGATCGTAGTT11.4492753623188406No Hit
GTCCTCGCAGGTAGCATCAAGCAGGGACGGCTGCCGCTCCGGTGAACTCA11.4492753623188406No Hit
GACTGGGCGGCGGCGGTCGCTACTTGAAGCGCCTGCGGATCGGCAAGACC11.4492753623188406No Hit
CAGCCAGGTTTTGTTTTTGATTACGAGGTTATGCAGATCGGTGGTATAGC11.4492753623188406No Hit
TTAGTAGCCTGGTTGTCCAGACGCTGGTTAGCGCGAGCTGCGTCGTCTTT11.4492753623188406No Hit
GTATCCAGCACGCCCCCGTCCTCATGGACGGTGGCCAAGCCCCATCCCCA11.4492753623188406No Hit
TTCAGACTTGGTCCACCATGCTTGGCGTTTAGTTCGTTTTCCCCGACTGT11.4492753623188406No Hit
CTCCAAGACGGATTCCATCCCGCCGCCGGAGGTCCCGTCTGTCCGGACTG11.4492753623188406No Hit
ACTTCAGCGGGTTCGCAGCCAGCAACGCCGCTCCCGTAGCGCACAACTGC11.4492753623188406No Hit
GTCCATGTAGTCGGCATAGCCACGAAAGGACGTGTTGCGCCAGGCTGTAT11.4492753623188406No Hit
AGCGAGGTCACCGCCTGAAAGGCCTGTGATTCGTGAAAGATATACTCGGC11.4492753623188406No Hit
CCCCCTTCGTCTGTGAGTAGGAGGGAATACTTCGCGCGGCCTTCCGCCAC11.4492753623188406No Hit
GTCAGGGACAGGAGCTGAAGATGAACTTTACACAAGAAACTCAGGAGTAA11.4492753623188406No Hit
TCTATGAAGACTTTAAACGTGTTTTTATGAAAATTCAAATCTAATTATGT11.4492753623188406No Hit
GGTCGCGCCGGCGCGCGCCACCGCGCACCTATAGCCCTCGAAGGCGGGGG11.4492753623188406No Hit
GTACAACCATTAAGGAGGCTTTTTATGTTTTTATCGGAAGAGTTATTACA11.4492753623188406No Hit
TTTCTAACCAGATTCCAGCTGATGGGGAAGCTACTGCTGCTGCTGCTTGC11.4492753623188406No Hit
GAATATATACCTAGAATTGAATGTCTTAGCAATTGTGAATGTTGCTTTAC11.4492753623188406No Hit
GTCATATATAACGTGACATAATTACGAGAGTCAGGTTCCATCACAGGTGC11.4492753623188406No Hit
ACATGGTGAAACCTCGCCTCTACTAAAAATACAAAAATTAGCCAGGTGTG11.4492753623188406No Hit
GTTCACCGGTTCCTTTCGCTGGCCGGGCGATTGTGGTGCAGGCAACAAAT11.4492753623188406No Hit
GGCGACACCGGCGGCGGTCGGGTCACCGAGCTGCTCGTCCGCCCGCTGCT11.4492753623188406No Hit
GCCTCGCACGGCGGCGGCTACAACGCGCAGAAGCGCGCCTTCGACGAGGT11.4492753623188406No Hit
GACCATTCTGCCGCCCGGGGGCAAGGATCCAGTTTAATCTGACTTTTGCC11.4492753623188406No Hit
GTCCGGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCATAGA11.4492753623188406No Hit
TACTGGAGCTGTATTTGCCATATTATTATGAGAATGATTATTACTGCCAC11.4492753623188406No Hit
CCCGAGAACAGGAACATGGGCACGCTCACCACCTGGATGAGGTCGAAGTC11.4492753623188406No Hit
GCTCATGATTCTCTGTGTGTGAATGTGTGTGTGTCTGCACACTCACATGC11.4492753623188406No Hit
GCTCTGCCATGGTATTCATGACTTTGCTTAAGCCCGGCGCAATTTTACGC11.4492753623188406No Hit
AACCGGCGGCGTTGCGGCAGCGGCGCCCGAGCGCGTTTGGCTGCGCGAAG11.4492753623188406No Hit
ATCCAACGATGATTCCAACAACAAGACCGACAATGATTCCTCGTCCAACT11.4492753623188406No Hit
CACCAAGGTCGTTCACGAGACCACCGACCTGCTGACCCAGAAGAAAGCTT11.4492753623188406No Hit
GCACAGTGATGTGCTTCCGACGGGCACCTACGAAGGTCGCGGCGATGAAT11.4492753623188406No Hit
CGCCCCATCTTCTGGTCGATGTCGTAGTCGGCCACCATATTGAACGTGTT11.4492753623188406No Hit
GTCCTGGTCGAGATGGACGCGGACGGCTCGCACCAGCCCGAGCAGCTGCC11.4492753623188406No Hit
GCTGTACTATGTATTTTGGGAGGCGATGCTGATCCCTATGTTTTTGGTGA11.4492753623188406No Hit
GGTCTCCATTGAGGCGAATGTGGCCGCCCTTGACGGCGGCGGTAGCCAAC11.4492753623188406No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)