FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003668789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGTGCTTTTATTATTACTTATCCCTGTCTAACCAGTCGCCGCTTTC26.451612903225806No Hit
GCAATGTGCGGCGCAGCCAATCGTTGAAATATCCATTGCGTCGCGCATGG26.451612903225806No Hit
ATGACAGACAATATAAACAATACGAATAACAGGGCGTTAATAGAACGTTA13.225806451612903No Hit
CCTTTATCTGTGCAACGCATTTGGCTGAACATGGCAGCTTAACTTTTAAA13.225806451612903No Hit
CATAGACATGACCATTTGTGAGCGTTTGTGCCTGTTTTAGCGCACTGGCC13.225806451612903No Hit
AAACTAGACAGAAGCATTCTCATAAACTTGTTTGTGATGGCTGAACTCAG13.225806451612903No Hit
ATTCCATTCCATTCCATGATTCCGTTTGATTCCATTCGATGATTCCCTTC13.225806451612903No Hit
GATGCCGGCCGCGCCCGCGCCGGCGATCACCACACGCGTGTCGGCGAAGC13.225806451612903No Hit
AGCTCCTTCGACAGGGCCGTGAGAGCCTCACGCGCATCGGCCACCAACAT13.225806451612903No Hit
CGTTACTACTAAGTTTGCTGGCTTTCCTGGTCGGAAACCGTTTCGGTACA13.225806451612903No Hit
GAGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTGGGCCTGTCTCTTAT13.225806451612903No Hit
GCTCACCATAAACTCTGCATCCCAGATTCAAGTGATTCACCAGCTGAGTC13.225806451612903No Hit
GGACGGGGTCGACGGGTTCGCGGGCAGCCCCTACAGGGTGGAACACTTCG13.225806451612903No Hit
TCCGGGCGCCGAACCCTTCACCATCGTCAATCCGCCGCCGAACGTGACCG13.225806451612903No Hit
GATTTCTGAGATTTTGGTGCACCCATCACCCGAGCAGCTGTCTCTTATAC13.225806451612903No Hit
GTTCTGGATGGGTGCGCATTTGCTGAATGAAGCGCAGGGCGATCGGTTTT13.225806451612903No Hit
CCTTAAGTTCCTTAGGATGGCTCAACTCTTTCACACTTCCAGCACTGTCT13.225806451612903No Hit
ATATCCAGCTGACCCAGTACCTGCTGCAGTGACAGACAAAGCTGTCTCTT13.225806451612903No Hit
CCTGACCTCAGGTGATCTACCTGCCTCAGTCTCCTAACTGTCTCTTATAC13.225806451612903No Hit
CACTGCATCGAAACCAAGGAAAGAGAAGCAGACGATCGTCGCCCCGGTAA13.225806451612903No Hit
GTGGATCAACAAAATGAAGTCATAAGAGAAAAGACTAGGGGAAGGGGTGA13.225806451612903No Hit
CCCAAAGTCTGGTATGAAAAATCCTGCTTTGATCTGAAAATTATAACTTA13.225806451612903No Hit
GATTCCATCTCTATTTTTTTTTAAAAAAAGGACTCTTAGGACAATGGTAT13.225806451612903No Hit
GTTTGGAAAAGGCTAATCTATTAGCTTTTTAAAGGATGAATTGGAGAGTG13.225806451612903No Hit
TGCCCATCCTCCTCCACTTCCACCCGCTCCTGCCCGTTCTCCATGATTCT13.225806451612903No Hit
CTCGAAACGGTATTCCATGCGCGCGCCAAGTATCGCTATGAAGGTCCGCC13.225806451612903No Hit
GGCCAAGTCTGGTGCCAAGAGCACCTTCGTCGCTGGCTCTGGGTCTCCCC13.225806451612903No Hit
GCCTCCCCACCCCCAGCCGGCAGCGGCAACCCGCTTGGGTCCCCTTCCGC13.225806451612903No Hit
ATCTGGCACCGCCTGCTGCATTTTGTAGAAAATACCCCGATCGGTTGCCA13.225806451612903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)