FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003668960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003668960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCAGAGCCAGTGCTCTCAGAGGCTGAGGGGAAAATCCATCCTTTGACT38.571428571428571No Hit
TTGCTGATCTGGGTTAGGGAGATGCCAGAAACACACCCAGGTTTGAACCA38.571428571428571No Hit
TATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGAGCT25.714285714285714No Hit
CAGAGCATCCTGGCCAGAACAAGCCAAGGAGCCAAGACGAGAGGGACACA25.714285714285714No Hit
CCCATTACTACTGTACCAGGTCCAATTTAAAGGAAAACAATTTTGACATT25.714285714285714No Hit
ATCAGGAAGTCTTCCTCCCGCTCCCCCACTGCCGTCACCTTCCCAGGATA25.714285714285714No Hit
ACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGAT25.714285714285714No Hit
GGTCTGGGCTATTGGCTGGAGCCAGGACATGAGTCAGGGGCACCATGGAC25.714285714285714No Hit
AGCTAGAACTGAACTGGAACAACAGATTCTTGAACCACTGTTTGGAGCAC12.857142857142857No Hit
CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTA12.857142857142857No Hit
GATCTGAGGACAGGAGCCTGTGCTTCTTCCACAGGACAAGGTGAGAGGGC12.857142857142857No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT12.857142857142857No Hit
CTGGTAGAGCAGCTTAAGATGGAAGCCAATATCGACAGGATAAAGGTGTC12.857142857142857No Hit
GGCTGAGGTGGCTGTGGGGCTACCTCTTCCATCTCAGAAGAGTGAGGATT12.857142857142857No Hit
GGCAAAGTCAGGCCTTTCTCTGTTAATCTCAGGTTTGCCTGATTAGCCTC12.857142857142857No Hit
GGCCAAACGGGCCCTGTCTTCTCAGCATCAAGCAAGAATTGAAATTGAGT12.857142857142857No Hit
GCCTTTGCTGCAGCCATCTCCATGGTGGTGGCCATGGCGGTGTACACCAG12.857142857142857No Hit
GTTGTCAAAGTCCTCCCCACCCAGGTGGGTGTCCCCGGCCGTGGCCTTCA12.857142857142857No Hit
GACCGAGACCTGGGCCGGCTCCCACTCCATGAGGTATTTCTACACCGCCA12.857142857142857No Hit
CCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGGAGAAGCTGTGC12.857142857142857No Hit
ACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCT12.857142857142857No Hit
CCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCA12.857142857142857No Hit
CCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATA12.857142857142857No Hit
CCCCTAGAAGCATTTGCGGTGGACGATGGAGGGGCCGGACTCGTCATACT12.857142857142857No Hit
AGCACAGAGTCACTATTGCGGTTAGAAGGCGGTGCTCTTCTGCCTGAGTG12.857142857142857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)