FastQCFastQC Report
Tue 10 May 2022
EGAF00003669044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196429
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT2380.12116337200718835No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG2310.11759974341874163No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG2220.11301793523359586No Hit
GTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGT2220.11301793523359586No Hit
ATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAA2190.11149066583854726No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT2170.1104724862418482No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC2040.1038543188633043No Hit
GTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCC2010.1023270494682557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)