FastQCFastQC Report
Tue 10 May 2022
EGAF00003669681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32116
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA540.16814049072113588No Hit
GTGCACCACCTGCGTGGCCCCGGGCCCGGCCAAGGCGCGTGTGGCCCTCA510.15879935234773945No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC480.149458213974343No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC470.14634450118321088No Hit
GTGCAGAGCACCGGGCACATGCAGTGCAAAGTGTACGACTCGGTGCTGGC420.13077593722755013No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT400.12454851164528584No Hit
GTCTGTGCCCGTGTCGCAGAAGTACGAGCTGGGCGCAGCGCTGTACATCG370.1152073732718894No Hit
ACCATGAGCAGCGCGGTGGCCGCCCAGCCGATGTACAGCGCTGCGCCCAG360.11209366048075727No Hit
CTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGAT360.11209366048075727No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG350.1089799476896251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)