FastQCFastQC Report
Tue 10 May 2022
EGAF00003669682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32116
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCACCACCTGCGTGGCCCCGGGCCCGGCCAAGGCGCGTGTGGCCCTCA560.17436791630340018No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC480.149458213974343No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC440.1370033628098144No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA430.13388965001868228No Hit
GTGCAGACCCAGGCGCCGCAGCACAAGAGGCAGCCGCCTACCATGAGCAG420.13077593722755013No Hit
GTGCTGGCTCTGAGCACCGAGGTGCAGGCGGCGCGGGCGCTCACCGTGAG360.11209366048075727No Hit
ACCATGAGCAGCGCGGTGGCCGCCCAGCCGATGTACAGCGCTGCGCCCAG350.1089799476896251No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT350.1089799476896251No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG340.10586623489849296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)