FastQCFastQC Report
Tue 10 May 2022
EGAF00003669684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31719
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCAGACCCAGGCGCCGCAGCACAAGAGGCAGCCGCCTACCATGAGCAG570.17970301711907688No Hit
ACCATGAGCAGCGCGGTGGCCGCCCAGCCGATGTACAGCGCTGCGCCCAG430.13556543396702292No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA420.1324127494561619No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA400.12610738043443992No Hit
GTGCACCACCTGCGTGGCCCCGGGCCCGGCCAAGGCGCGTGTGGCCCTCA400.12610738043443992No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC390.12295469592357892No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC360.11349664239099592No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG340.10719127336927393No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT320.10088590434755194No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT320.10088590434755194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)