FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003669803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4443
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT430.9678145397254108No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT300.675219446320054No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA270.6076975016880486No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.42763898266936756No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA170.38262435291469726No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA150.337609723160027No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG150.337609723160027No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG140.31510240828269187No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG140.31510240828269187No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA130.2925950934053567No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA130.2925950934053567No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG130.2925950934053567No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA110.24758046365068648No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA100.22507314877335136No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT90.2025658338960162No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG90.2025658338960162No Hit
CTCTATAGCTTTAATTGAGATGTAGGCTGGGTAGCCAAATCCTATCAGGT80.18005851901868106No Hit
ATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA80.18005851901868106No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA80.18005851901868106No Hit
AGTCCGATGACACCAAGAGCGATGAAGCTCCTGTTCACGCCGGTTTTGGC70.15755120414134594No Hit
ATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA70.15755120414134594No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAA70.15755120414134594No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA70.15755120414134594No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA60.1350438892640108No Hit
GTACATGGGCCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCT60.1350438892640108No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA60.1350438892640108No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA60.1350438892640108No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT60.1350438892640108No Hit
GATGTAGGCTGGGTAGCCAAATCCTATCAGGTTGCAGAGGAGAGAGGCTC60.1350438892640108No Hit
TATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA60.1350438892640108No Hit
GTACATGGGCGGTCGGACAGCACTTCGGGCGCGCCGTCGCGCGTCATGCC60.1350438892640108No Hit
GTATCAACGCAGAGTACATGGGATGGGAGCTGCTTTCTTCCCCCACTCAT50.11253657438667568No Hit
TCGTGGCCCAGCAGGTCGCCTTCGACCAGCGTGCGCGCGACCACGGCCGC50.11253657438667568No Hit
GCAATAACACAGGGGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGT50.11253657438667568No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA50.11253657438667568No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG50.11253657438667568No Hit
GTACATGGGTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGC50.11253657438667568No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT50.11253657438667568No Hit
AGCCGAAGGTGCGCGAGCAGGCCATGGTGGCCATCAACGAAGGCGGCCTC50.11253657438667568No Hit
TATCAACGCAGAGTACATGGGACGGTGGCTCAAGCCTGTAATCCCAGCAC50.11253657438667568No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT50.11253657438667568No Hit
GTACATGGGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.11253657438667568No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG50.11253657438667568No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT50.11253657438667568No Hit
GTACATGGGGCTGCTCCGCCGCAGTCGCCGCTCCAGTCTATCCGGCACTA50.11253657438667568No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT50.11253657438667568No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG50.11253657438667568No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAA50.11253657438667568No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.11253657438667568No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)