FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003669868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTTGCCCGTCGACGCGGATCGTGCCCCGCGACGGGCGCTTGAGCCCC414.285714285714285No Hit
CTCGTCGATCCGCATGATCGAGTCCGAGGTGTGCACCTGGGGCAGGTCGA27.142857142857142No Hit
CCGGGCAGTAGTGGAGGCGAATTCAGACATCGAGCGCTAGTGTAGAGTAG27.142857142857142No Hit
TCGAGGAGGAGGACTACTCTTCCACCTCCCGCACAGCTCCCGTCTCTCCA27.142857142857142No Hit
GATGGCGGTCGAGACGATGGTGGCGCGCCAGCTCACCTACTTCGCGGCGC27.142857142857142No Hit
GAACAATGATAATGACGGCGCGAGCGCGGAGGCTGGGAGGCGTGCGCGTG27.142857142857142No Hit
GTGAATGCCCTTGACAGGTTCTCAAATGGTACACAAGTCGAGGTCAGTCG27.142857142857142No Hit
CAGGGAGCCCAACCATGTGGAACTCGCCACCAACGCGCAGCGTCGACAGG13.571428571428571No Hit
GTACCTAGACTGTGCCGGTGACCACCGCAGCACCTTCCGCTCAGATCCGC13.571428571428571No Hit
GCAACCGCATCGAACTCCTCGTTGAAGCCACCGAGGGCTCCTCGGCCCTG13.571428571428571No Hit
GTGCTGAGCCAATGGCACACCGAAGCCGCCAACACCCATGCCGAGGTGCT13.571428571428571No Hit
GCGCGCATCGCCGCCACGGACGCGCAGGCGCGGCTCAAGGTCGAGCTCGA13.571428571428571No Hit
CGTCCGGATCGACGCCGTTGGCCTGCAGCGCCATGGCGACCATCGGCTTG13.571428571428571No Hit
GCCCAGCGGGCGCGCCAGGAGGAGGGCGGGCTGGCCCTGCTGCTGATCGA13.571428571428571No Hit
CATCGCAGTCGACCAGCAAAAAGTCCGCCTGCTTGCCCGCCGCGATCTCG13.571428571428571No Hit
GTACTACCGCGACGCCAAGATCCTGACCATCTACGAGGGCACCACCGCGA13.571428571428571No Hit
ACCTCGACCACGTCCTCGGGGCGGTGCACGTCAAGGACCTGTTCAGGGCG13.571428571428571No Hit
ATTCTGAACAAGTGACACTTGGCTGCATGAGGCTGGGGAAACAATGACAG13.571428571428571No Hit
CGGCCGCGGCTCGCGGTTGCGTTCTCCACTCGGATCGATGAACTTGCGCC13.571428571428571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)