FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003669959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTTCGAAGGCCATCTGGCCGTCAAAGGTGTACTGGTTTATCGGCGTCG33.3707865168539324No Hit
ACATCCTGGTGACGCACGGGCTGGTGCATGGATTAGAGACGAAACAGCAC22.247191011235955No Hit
ATCTGAGACAACATCGAATTGTTGCCCATCCGCCTGATGTCGTAGACTCG22.247191011235955No Hit
GGCCTGTTCCGCACGATTCACGAGTACTGGGGGACGTTAGCCAGGATGGG22.247191011235955No Hit
GGCCTCTGCCTCGCGCGCGACATTGTCGAGCACCTGCGCTTTGCGCGCCT22.247191011235955No Hit
GTCGAGTGCGGGGAGTGCCTCCGCGAAAAGCCATGGAGTGCTGTGCCTGG22.247191011235955No Hit
ACCGGGGGTGGCAACTTCACGGCAGCCCGTCGATCACCTGCGTCGACGGT22.247191011235955No Hit
TCCAGCAGCTGTTCGCCGAGCTCGCCGTGACCCTGGTGCCGCAGTCGGCG22.247191011235955No Hit
ACCCGTACGCGGTCGACCAGGCCGGCGGCCAGCAGCGCGCGGTTCAGCGT22.247191011235955No Hit
GATTACAGGCATGTACCACCACACCCAGCTAATTTTGTATTTTTAGTAGA22.247191011235955No Hit
CTGGAAGCCCGTGACCTGGTCGCGGCCGTCGACGGTGGTGATGCAGGTCT22.247191011235955No Hit
GTGCAGGGGGGCAGTCTTCTGGCCATGGACTCTCCCTAAGGCCCTTCCAG22.247191011235955No Hit
CGCCCCAGAGACTCTCGCCCATGGCGCGGGCAACCTCCAGCGACGTCCGC11.1235955056179776No Hit
GCGCTGCGGCGCAGCCTCATCGCCGGGCTGCCGACCGAAAGCTTCCACTG11.1235955056179776No Hit
GCCATGCGCTGTCGATCTCGCGTGCTCGAACGCTTCACCCGCTCTTCTTC11.1235955056179776No Hit
GTATTAGAGGCCACCGATTTCATACAACAGTGTTTCGCTAAAGACCCTTC11.1235955056179776No Hit
CTTCCACGTTGACCGTTTGCGGGCTGCCAAGCCAGCGCGCATTGTTCCCA11.1235955056179776No Hit
GCCATCGCGGCGCTTACGGCGGCTGGTGATGCTCACGGTTACCCGCAGGT11.1235955056179776No Hit
GACACCGTGGTGCTGGCCCTGCCCGCCGCCGAAGCCGCCCAGCTCACCGC11.1235955056179776No Hit
GGATCAGCGCGATCAGCGTGAGGTTGCTCGGCGCCTCCTGCAGCCGGTCC11.1235955056179776No Hit
GCACTACGACGTGCAGCCTCCGGAACCGCTGGAGCTCTGGGAGAGCGACC11.1235955056179776No Hit
CTAGCGGAACGGTCCGGCAAATCCAGCCGCAGGCTGGCCCCGAGCTGCTT11.1235955056179776No Hit
GACTATGTACGTCTTCTGCTGGTTGGACCGGTAGAACGGATCTCGGCGCT11.1235955056179776No Hit
CATTGGCAGCCTCTTGAAGCGTATGGCAGTCGAGAGTCGAGCACTTGATG11.1235955056179776No Hit
TTCCTGAAGCAGCCAGTAAACCAATCAATTCTCGCCAGTGTTCTTCCGGC11.1235955056179776No Hit
GGCTTAGCTTACCGATGATAACCTCGGAGTTTGGCTGTCTAGGGGCTGGG11.1235955056179776No Hit
ACGTCGCGGAACGCCGCTTCGCCATGCTCGGCAAAGTACTGCTTGATGGT11.1235955056179776No Hit
CCCCCGACGACGTGCGCGACGTCATCACGGGTATCGAAGAGCGCGGCGTG11.1235955056179776No Hit
ATCTTGGTGTGGTCGGGGTCTTGGAGCCGCATCAGCGGGGTGGTGACCTG11.1235955056179776No Hit
GCCTTCCAGCACTCGGTGGAACTGGCCGAGCAGGTGCGCGAGCGCACCGA11.1235955056179776No Hit
GCCATAGGAGCTCCACTATGATATTATCGTAGTTTTGAAGGTGTGGTGGT11.1235955056179776No Hit
CCAATGTGGAGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCCAGGC11.1235955056179776No Hit
CCATCCACAACTTGCGTTATTACCAACGTTTAATGGCGGAAATCCGCCAA11.1235955056179776No Hit
GAGTGGAACCCCGCGGGGGGCGTGGGGGGTCGTCCCCCCTCAGGACATGG11.1235955056179776No Hit
CTCGACCAGTGAGCTATTACGCACTCTTTAAATGGTGGCTGCTTCTAAGC11.1235955056179776No Hit
GTACATCAGGAAACCCAGCAGGAAGAAGACCAGCAACCAGACCCAGATCC11.1235955056179776No Hit
ATTTAAACTCCGGTCCCCTAAACCGACTGGGGCGGACCTGTCCGCCTGCC11.1235955056179776No Hit
CTAACAGTCAGGATCCTCAGCTGCAGGTCTGTTGGAGTTTGCTGGAGATC11.1235955056179776No Hit
GCCGTTGTCAGAGCGATGGCGGCCGCACGGGTCGGAAGGCCACGGCGGAT11.1235955056179776No Hit
CCTGTGCCTCCTCGAAATCGAACCGGTCCGTCTCGAGGATTCGGGATGGA11.1235955056179776No Hit
GTCATCGAATGAATTGAATGCAATCATCGAATGGTCTCGAATGGAATCAT11.1235955056179776No Hit
GGCCGGGCTTGGGCGGCTGCGCGTGGGCCACGCCCAGGTAGATCAGGCGC11.1235955056179776No Hit
TCTCCGCGTGGCGCCTTTGCCGACGCAGACGTTTCAGTTTCTTCAGGTCG11.1235955056179776No Hit
GTGGCGGCGCATCGAGTTCTACGTCGCGCAGGCGCGTGCGCTGGAAGACT11.1235955056179776No Hit
CCCCACCAAGCAGGGGCTAAACCATCTGCCCTAATCCCGAACAGCCTCAG11.1235955056179776No Hit
GCGCGAGCAGGTTGAGCAGGTGCGCTCGGGCCAGGCGCAGGTGAAGGAGG11.1235955056179776No Hit
AAAGACATATTAAATGTATTTCTAAATAAGTTATCTGAATTGAACGTGTC11.1235955056179776No Hit
GGCCTGGGTCGTAATGCATTCCCCGGCGGTCGATGATGATCGACTGCGGC11.1235955056179776No Hit
AGCCAAGCCCATCCGGCTGAGCCTTCTTTGTGGACAGTTAGGAAGGCTTT11.1235955056179776No Hit
TACCGGATGTTTGAAAATTTGCCGACCTTTTTCACCTCCAACTTTGATAT11.1235955056179776No Hit
CAACTCGTCCAACGCCTGCAATCCTCGGGTGCCGAGTTCGACCTTTACAT11.1235955056179776No Hit
AGTGATGGCGAAGGGCAGCGTGCGCAGCGCCTCTTCCAACAACGTGCGCT11.1235955056179776No Hit
GCGAACCGCAGCCCGCGCAGGTCCATCAGCTCGGTCGGGTGCTGACCGGG11.1235955056179776No Hit
CTGCAGAAGGGTCTCGCCGGTGTTGCCCTTCCGGGTCGATGCCTTCTTGT11.1235955056179776No Hit
ATCGTCATCAACGCCGCCGGGTCCATGCCGGGCGACCTCCAGGCGCTGTG11.1235955056179776No Hit
ATCCGGGCAAGGCCAGGCAGGGCCCCATCAGAGGCGTCAACGTCATACCC11.1235955056179776No Hit
GCGGAGGGCGATCTGACCCAGCAGGCATCGGTGACGGAGGACATCACCGG11.1235955056179776No Hit
TCTAGGGCTTGCTCACAACGCTTGCGGATGCTCTCAACCAGATCCTCAGC11.1235955056179776No Hit
GGGTGAGGCGACGCTGGTCACGCTTTCGGGGGGCAATGTCGACGCCGAGC11.1235955056179776No Hit
GTTGCCTGCTCAACCTCACCCAAGATAGCCGCGAGCTTTCGCCACAACCA11.1235955056179776No Hit
AGCTAGCCGAAACCCTCAGCGAAGATCCCAAGACCGTGGCCGCATTCGTC11.1235955056179776No Hit
TAGTCTTCCTCACCGTAGTCCTCGGCATCGGCGCCGTCGGAGTCCTCAGC11.1235955056179776No Hit
GACCAGGGAAGGTTGCCCGCAGTCGCGGCGCCGCGGTAGATCTCGGTGGC11.1235955056179776No Hit
CCCCTGGATTCTAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA11.1235955056179776No Hit
GTGACGGCCTCCCCGAGCACGAGCTCGTCGTCAACGCCCGACCCTGCGTG11.1235955056179776No Hit
CAGCTTGCCCGCTTCGGCCCACGACAGCGGCTGGCCGATACGCAGCTGGT11.1235955056179776No Hit
TCCCATGGCCCGCGCCCAGCGGCTGGCGCGCGTTGTCGAAATCGAGCGGC11.1235955056179776No Hit
GTCCTCGTCCACGTCGACCTCGTTGAAGCCGCCCTGGAGGAGGTTCACGC11.1235955056179776No Hit
ACCACAAGGCTGCCGCCGCGCTTCAGACGCCCGTCGACAACAAGGCTTGG11.1235955056179776No Hit
CCCAGCAGCTGCACGCGCGGCGTCAGCTTCGGCCCCTCCTGCAGCAGGTA11.1235955056179776No Hit
GTCACTTTCAGGTACACCAATCAGATGTAGATTTGGTCTTTTCACATAGT11.1235955056179776No Hit
TAAGAAATGCTCTCGATGCCGCTCGTCTGCCGCCTTCGCCTCGCCTTCCT11.1235955056179776No Hit
GCGTCGAAGATCGAGGTGCGGGCGTCGCCGCGGAAGTCGGTGGCCACGAC11.1235955056179776No Hit
GTGTACGGCCTGCTCAACGCCGCCTGGCTGCAGCGCCACACCGAACTCAA11.1235955056179776No Hit
CTCCAATTGGCGCTCGAAGCGCTTCGCCTCCTGCGCGGTAGTAACCGCGG11.1235955056179776No Hit
GCATAGGCGATGCCAAGTCCTCCCTTGCGTGCCCCCAGGAAGATGAATAG11.1235955056179776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)