FastQCFastQC Report
Tue 10 May 2022
EGAF00003669973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003669973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences744180
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA12650.16998575613426858No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT12130.1629981993603698No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA10480.14082614421242173No Hit
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT8090.10871025827084844No Hit
GTATCAACGCAGAGTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCA8010.10763524953640248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)