FastQCFastQC Report
Tue 10 May 2022
EGAF00003670145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29061
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTCCTGCAGCCAAGAA880.3028113278964936No Hit
CCATATAGCTACGGGAACCTAGTCCATATCGCTTTCACTCTCGCTCTCAC820.28216510099445996No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG660.22710849592237017No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT580.1995801933863253No Hit
ATCTTTAACAGTCCTCCTCTCTTTTTTGAATCAAGGGTTCCAGTTAAGCT570.1961391555693197No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG520.17893396648429166No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT470.16172877739926364No Hit
GTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGCCGTGACGGCCAG450.1548467017652524No Hit
GTACATGGGAGTGCGTCCTACAGATACCACAACCTGGATCAGGTCCAAGC370.12731839922920754No Hit
ACATTACACATAACATTAAAACTGAAGGGGAAAAAAAAACCAAAAACCAG370.12731839922920754No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT360.12387736141220192No Hit
ATATTGATGAGCTGTCGCCCCAGACGCTGTACAAGCTGTACAAGTATGTC350.1204363235951963No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT340.11699528577819071No Hit
GTATGGGCGTCCGATGTGCCAGATGCAGCAGCGGGCGCCGAGGCGGCGCC320.11011321014417948No Hit
GTATCAACGCAGAGTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTC310.10667217232717388No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA310.10667217232717388No Hit
GTATCAACGCAGAGTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCG310.10667217232717388No Hit
GTACAAGCTGTACAAGTATGTCGTTCGTCCTAAGAAGAAGAGCGCCTCTT310.10667217232717388No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT300.10323113451016827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)