FastQCFastQC Report
Tue 10 May 2022
EGAF00003670146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003670146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29061
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTCCTGCAGCCAAGAA870.29937029007948796No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG790.27184198754344313No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT600.20646226902033654No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500.17205189085028044No Hit
ATCTTTAACAGTCCTCCTCTCTTTTTTGAATCAAGGGTTCCAGTTAAGCT470.16172877739926364No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT450.1548467017652524No Hit
GTATCAACGCAGAGTACATGGGAAGGCGGGTGATAAGAAACGCAAGAGTC400.13764151268022437No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA400.13764151268022437No Hit
CATTAAAACTGAAGGGGAAAAAAAAACCAAAAACCAGTTTGTTACTTCAC390.13420047486321873No Hit
GTACATGGGAGCGCGGCTCAGCCATGAGCAACAGGAGTAGCTTTTCCCGG370.12731839922920754No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT360.12387736141220192No Hit
CCATATAGCTACGGGAACCTAGTCCATATCGCTTTCACTCTCGCTCTCAC320.11011321014417948No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG320.11011321014417948No Hit
GTACATGGGGATGACGTCTCAGAAATTTGCGGAGCGAGCTTACAAGTACA320.11011321014417948No Hit
GTACATGGGTCATCTTCTTCTACGTGCTGGCCAAGGGCTTCGAGATGGCC310.10667217232717388No Hit
GTACATGGGACGATCGTCGCCGTCCTCTGCTTCGTCGCCGTGACGGCCAG310.10667217232717388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)